Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq7019 100 2e-16 >seq1 Length=54145758 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| |||||||| || |||||||||||||| || || || ||||||| ||| Sbjct 34287165 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTC 34287106 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||||||| ||| | | || ||||| ||| |||| || || | || || ||||| | Sbjct 34287105 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCAT 34287047 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || || || ||||||||||||||| ||||| || || Sbjct 34287046 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 34286998 >seq7019 Length=13215502 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| ||||||| | |||||| || || Sbjct 948440 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGGA 948499 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 948500 ATGGAGAACCATGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 948547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406250056049112