Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
seq7019 100 2e-16
>seq1
Length=54145758
Score = 127 bits (140), Expect = 2e-24
Identities = 131/169 (78%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
|||||| |||| |||||||| || |||||||||||||| || || || ||||||| |||
Sbjct 34287165 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTC 34287106
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
|||||||| ||| | | || ||||| ||| |||| || || | || || ||||| |
Sbjct 34287105 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCAT 34287047
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||| ||||| || || || ||||||||||||||| ||||| || ||
Sbjct 34287046 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 34286998
>seq7019
Length=13215502
Score = 100 bits (110), Expect = 2e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| |||||||||||||| |||| || || |||||| ||||||| | |||||| || ||
Sbjct 948440 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGGA 948499
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || ||| |||||||||||| | ||||| || |||
Sbjct 948500 ATGGAGAACCATGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 948547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406250056049112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |