Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 6e-12 >seq1 Length=54145758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| || | || || || || || | Sbjct 34287011 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCCAATGGATCACGTGAGTTCC 34287070 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| |||||| | | || ||||| |||||||| || || || || |||| Sbjct 34287071 TGGATAAGCAGGGGTTTTGCACCAGAGAAGAGGGGGACTTGGGACCAGTTTATGGTTTCC 34287130 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 34287131 AGTGGAGGCACTTTGGAGCAGAATA 34287155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || |||||||| ||||| || Sbjct 34287155 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCT 34287096 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| |||| ||||| || || || || || | || ||||| |||||| Sbjct 34287095 CTGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCATCCCAAATCTTC 34287036 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 34287035 ACACCTTTTGCAGAGAGCTCTTTGG 34287011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448194118429920