Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq59 100 2e-16 seq1 87.8 1e-12 >seq59 Length=4655252 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||||| |||||||| || ||||| || ||||| || ||||||||| Sbjct 1203435 GTGGTGGAGGAGCTGTTCCGTGATGGGGTCAATTGGGGCCGGATTGTCGCCTTCTTTGAG 1203376 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| || || || || || | | || | | || || |||||| Sbjct 1203375 TTCGGTGGCGTGATGTGCGTCGAGAGTGTGAACCGGGAGATGTCGCCGCTGGTGGACAAC 1203316 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| | |||||||| || Sbjct 1203315 ATTGCCACCTGGATGACTGA 1203296 >seq1 Length=54145758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || || ||||||||||| | || |||||||| | ||| ||||| Sbjct 34290834 AGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 34290775 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || ||||| |||| ||| ||||| || || || ||| | Sbjct 34290774 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCCATTTAGA 34290715 Query 118654 ACATAAAACTG 118664 ||||| ||||| Sbjct 34290714 ACATAGAACTG 34290704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414415243200904