Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq59 100 2e-16
seq1 87.8 1e-12
>seq59
Length=4655252
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||| ||||| |||||||| || ||||| || ||||| || |||||||||
Sbjct 1203435 GTGGTGGAGGAGCTGTTCCGTGATGGGGTCAATTGGGGCCGGATTGTCGCCTTCTTTGAG 1203376
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||| || || || || || | | || | | || || ||||||
Sbjct 1203375 TTCGGTGGCGTGATGTGCGTCGAGAGTGTGAACCGGGAGATGTCGCCGCTGGTGGACAAC 1203316
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|||||| | |||||||| ||
Sbjct 1203315 ATTGCCACCTGGATGACTGA 1203296
>seq1
Length=54145758
Score = 87.8 bits (96), Expect = 1e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|||||||| | || || ||||||||||| | || |||||||| | ||| |||||
Sbjct 34290834 AGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 34290775
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| || || ||||| ||| | || ||||| |||| ||| ||||| || || || ||| |
Sbjct 34290774 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCCATTTAGA 34290715
Query 118654 ACATAAAACTG 118664
||||| |||||
Sbjct 34290714 ACATAGAACTG 34290704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414415243200904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |