Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq89 150 4e-31
seq114 141 2e-28
>seq89
Length=7284382
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||||||||| || || |||| ||||| || | || || | ||||||
Sbjct 2822439 CAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 2822498
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| || ||||||||
Sbjct 2822499 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 2822558
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| ||||||||||| || |||||| || || ||||| ||
Sbjct 2822559 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGT 2822618
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||| || || | ||| | ||||| ||
Sbjct 2822619 TTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 2822654
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || ||||| || ||||| || || |||| ||||| || | || ||| | || ||
Sbjct 2822211 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTC 2822270
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| ||||| || ||||||||
Sbjct 2822271 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTC 2822330
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || |||||||| ||| || || || | ||||| ||
Sbjct 2822331 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGT 2822390
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| |||||||| || ||
Sbjct 2822391 CTTACCCGTCAAGGTCTT 2822408
>seq114
Length=3819349
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || || || || ||||| || || |||| ||||| || | || || | ||| ||
Sbjct 3316003 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 3316062
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || || || ||||| ||||| |||||
Sbjct 3316063 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTC 3316122
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| ||| |||||||| || ||| || || | ||||| ||
Sbjct 3316123 TTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGT 3316182
Query 225681 CTTGCCCGTCAAAGTTTT 225698
|||||| ||||| |||||
Sbjct 3316183 CTTGCCAGTCAAGGTTTT 3316200
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || || || || ||||| || || |||| ||||| || | || || | ||||||
Sbjct 3316231 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 3316290
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||| |||||
Sbjct 3316291 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 3316350
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| |||||| || |||||||| || ||| || || | ||||| ||
Sbjct 3316351 TTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGT 3316410
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 3316411 CTTGCCAGTCA 3316421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192345006377084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |