Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq7019 100 2e-16
seq1 100 2e-16
>seq7019
Length=13215502
Score = 100 bits (110), Expect = 2e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| |||| || | |||||| ||||||| | |||||| || ||
Sbjct 948440 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGGA 948499
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || ||| |||||||||||| | ||||| ||||||
Sbjct 948500 ATGGAGAACCATGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 948547
>seq1
Length=54145758
Score = 100 bits (110), Expect = 2e-16
Identities = 112/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| |||||||||||||| || || || ||||||| ||| |||||||| ||| | | ||
Sbjct 34287143 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCTCTG-GTGCAAAA 34287085
Query 30077 CCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||||| ||| |||| || || | || || ||||| ||||| ||||| || || || |
Sbjct 34287084 CCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCATCCCAAATCTTCACACCTTTTGC 34287025
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||||||||||| ||||| || ||
Sbjct 34287024 AGAGAGCTCTTTGGCATTTGTAGAACC 34286998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406102877910796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |