Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq2 109 5e-19 >seq1 Length=54145758 Score = 129 bits (142), Expect = 5e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || ||||||||||| ||||| || ||||| || ||||| ||||||| Sbjct 8045445 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTA 8045386 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||||||||| |||||||| || |||||||| |||||||| | Sbjct 8045385 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 8045326 Query 4678 CGGCGGCAAACGCTAC 4693 | || ||||| || || Sbjct 8045325 CTGCAGCAAAGGCAAC 8045310 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/126 (78%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 4926 CTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 |||||| || | || || ||||| || || |||||||||||||| || || | |||||| Sbjct 8041286 CTTTCTCACCAGATTCTCATTTACAATTCCATCACTGGCTGCAAAGAAGGCGAGAACATG 8041227 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||| |||||||||| ||| || || || || || |||||||| || | || || | ||| Sbjct 8041226 AGAGATAAAGTACTTTTCATCTGGTTTTAGCTTGTTCCAGTGAGGAAGGTCCTTTGATAA 8041167 Query 5045 ATCAAC 5050 |||||| Sbjct 8041166 ATCAAC 8041161 >seq2 Length=38276455 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || || || |||||||| || | ||| |||||||| ||||| || || Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996 Query 4692 ACTAATCG 4699 |||| ||| Sbjct 2050997 ACTACTCG 2051004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || || ||||| ||||| || || |||||||| |||||||||||||| || ||| Sbjct 2052500 TCTTTGATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 2052559 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | |||||||| | ||| ||||| Sbjct 2052560 ATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 2052603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426986175927938