Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq2 102 1e-16 >seq1 Length=54145758 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| || | ||||||||||| || | ||| || Sbjct 8045431 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 8045372 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 8045371 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8045312 Query 46774 ACAAGTCTCTCTCC 46787 || | ||||| || Sbjct 8045311 ACCACCCTCTCACC 8045298 >seq2 Length=38276455 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || |||||||| ||||| |||||||||| || | || || Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996 Query 46774 ACAAGTCTCTCTCC 46787 || | || ||||| Sbjct 2050997 ACTACTCGTTCTCC 2051010 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||| Sbjct 2049589 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 2049648 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || |||||||| |||||||| ||||| Sbjct 2049649 TTCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 2049684 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || |||| |||||| |||||||||||||| || ||||| || || Sbjct 2052499 ATCTTTGATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 2052558 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || || || || ||| Sbjct 2052559 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTCT 2052604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712825802267520