Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 3e-18
seq2 102 1e-16
>seq1
Length=54145758
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || ||||| || | ||||||||||| || | ||| ||
Sbjct 8045431 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 8045372
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| |||||||| || || || || ||
Sbjct 8045371 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8045312
Query 46774 ACAAGTCTCTCTCC 46787
|| | ||||| ||
Sbjct 8045311 ACCACCCTCTCACC 8045298
>seq2
Length=38276455
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
||||||||||| || | || |||||||| ||||| |||||||||| || | || ||
Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || ||||| ||||||||||| || ||||| || || || |||||
Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996
Query 46774 ACAAGTCTCTCTCC 46787
|| | || |||||
Sbjct 2050997 ACTACTCGTTCTCC 2051010
Score = 96.9 bits (106), Expect = 5e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| |||||||| | || ||||||||||| || ||||| || ||||| || |||||
Sbjct 2049589 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 2049648
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
||||| || || |||||||| |||||||| |||||
Sbjct 2049649 TTCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 2049684
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||| | || || || |||| |||||| |||||||||||||| || ||||| || ||
Sbjct 2052499 ATCTTTGATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 2052558
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || || || ||||| | |||||| || || || || |||
Sbjct 2052559 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTCT 2052604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712825802267520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |