Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq114 141 2e-28 seq89 140 7e-28 seq49 89.7 1e-12 seq47 89.7 1e-12 seq22 89.7 1e-12 >seq114 Length=3819349 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | |||||| || |||||||| | ||| || || |||||||||||||||| Sbjct 3316216 ACCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3316275 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || || |||||||||| | || || || || Sbjct 3316276 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 3316335 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || |||||||||||||| || || ||| | || || ||||| | ||| || Sbjct 3316336 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAAC 3316395 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 3316396 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || |||||||| | ||| || || |||||||||||||||| Sbjct 3315989 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316048 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || || || ||||||| | || || ||| ||| Sbjct 3316049 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3316108 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||||||||| || || || | || || ||||| | ||| || Sbjct 3316109 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACC 3316168 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| || || || || |||||||| Sbjct 3316169 TCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 >seq89 Length=7284382 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | |||||| || ||||| || | ||| || || |||||||||||||||| Sbjct 2822197 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822256 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || || || ||||||| | || || || ||| Sbjct 2822257 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 2822316 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | || || ||||| | || || Sbjct 2822317 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACC 2822376 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||||||||| ||||| || || |||||||| Sbjct 2822377 TCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 2822423 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | |||||| || || ||||| | ||| || || |||||||||||||||| Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || ||| ||| Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||| ||||| | ||| || Sbjct 2822545 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 2822604 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| || || || |||| ||||| ||||| |||||||| || Sbjct 2822605 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 2822654 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | |||||| || ||||| || | ||| || || |||||||||||||||| Sbjct 2821968 ACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2822027 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || || || || || || || |||||||||| | || || ||| || Sbjct 2822028 CAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 2822087 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | || || ||||| | ||| || Sbjct 2822088 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCAC 2822147 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 2822148 CTCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2824204 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2824146 >seq49 Length=8165964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2828949 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2829007 >seq47 Length=5896676 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2004829 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2004887 >seq22 Length=12138678 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 5456210 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 5456268 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 5456857 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 5456915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046575769337644