Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq119 149 9e-31 seq40 143 4e-29 >seq119 Length=1119390 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || ||||| || || ||||| ||| ||| |||||||| || ||||||| Sbjct 530476 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 530417 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | ||| || || ||||||||||| || ||||| || || || |||||||| || || || Sbjct 530416 ATATCACAGACTCTGTTGTGTTCTCTTAGCCATATTGTTGCATACATCATTAGGCCTGGG 530357 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 530356 ACCAAGCCAAACACCTCCTGTCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGG 530297 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || || | || ||||||||||| || ||||||||| Sbjct 530296 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 530237 Query 9484 TG 9485 || Sbjct 530236 TG 530235 Score = 143 bits (158), Expect = 4e-29 Identities = 226/320 (71%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 532692 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 532633 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | |||||||| | ||| || ||||| || |||||||||||| | |||| Sbjct 532632 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTACTTGGCTTCCAGTACTCAGGGG 532573 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || || |||| || ||||| || |||||||| || || | || | || Sbjct 532572 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 532513 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || | |||||||| || ||||| || | ||||| ||| Sbjct 532512 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 532454 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 532453 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 532394 Query 8587 TTTATTAATAAAAAATAACA 8606 |||||||| || || |||| Sbjct 532393 ATTATTAATGAATAAGAACA 532374 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 528592 ACCTTTAACACCCATCGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 528533 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| ||||||||||| | ||| | ||||| ||||||| | || Sbjct 528532 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAATTATAGTCACTGTTGTATGTTGG 528473 Query 10030 AGGGCTGTCAATCAAATCGGATCT 10053 |||||||||||||| | ||||| Sbjct 528472 TGGGCTGTCAATCAAGTGTGATCT 528449 >seq40 Length=8742107 Score = 143 bits (158), Expect = 4e-29 Identities = 217/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || |||||||| | |||||||| ||| |||||| || || || || Sbjct 7076050 CATCCGGCACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 7075991 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| ||||||||||| |||| || |||| || ||||| |||||||||| Sbjct 7075990 CCAGTGATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCC 7075931 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || || || || ||||| || | Sbjct 7075930 AGTACTCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAA 7075871 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || |||||| ||||||| |||| || || | || || || | Sbjct 7075870 TCTCCACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTG 7075811 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| |||| |||||| || || || || || || || ||| || Sbjct 7075810 GATAAAACTCCAGAGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCT 7075751 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 7075750 CCTCTCCTG 7075742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716767601741440