Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq119 149 9e-31
seq40 143 4e-29
>seq119
Length=1119390
Score = 149 bits (164), Expect = 9e-31
Identities = 178/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| || ||||| || || ||||| ||| ||| |||||||| || |||||||
Sbjct 530476 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 530417
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| ||| || || ||||||||||| || ||||| || || || |||||||| || || ||
Sbjct 530416 ATATCACAGACTCTGTTGTGTTCTCTTAGCCATATTGTTGCATACATCATTAGGCCTGGG 530357
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| |||||| |||| || || |||| | ||| || || || || | |||||
Sbjct 530356 ACCAAGCCAAACACCTCCTGTCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGG 530297
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | | || ||| || || | || ||||||||||| || |||||||||
Sbjct 530296 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 530237
Query 9484 TG 9485
||
Sbjct 530236 TG 530235
Score = 143 bits (158), Expect = 4e-29
Identities = 226/320 (71%), Gaps = 3/320 (1%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| || || || ||| | |||| || ||| | | ||
Sbjct 532692 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 532633
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | |||||||| | ||| || ||||| || |||||||||||| | ||||
Sbjct 532632 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTACTTGGCTTCCAGTACTCAGGGG 532573
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||| || || |||| || ||||| || |||||||| || || | || | ||
Sbjct 532572 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 532513
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527
| ||||| |||||||| || | |||||||| || ||||| || | ||||| |||
Sbjct 532512 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 532454
Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586
| ||| || | |||||||||||| | ||||| ||||| || || |||||||||||
Sbjct 532453 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 532394
Query 8587 TTTATTAATAAAAAATAACA 8606
|||||||| || || ||||
Sbjct 532393 ATTATTAATGAATAAGAACA 532374
Score = 89.7 bits (98), Expect = 7e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| || || | || |||||||| || || || || || || | |||| |||
Sbjct 528592 ACCTTTAACACCCATCGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 528533
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
|||||| |||||||| ||||||||||| | ||| | ||||| ||||||| | ||
Sbjct 528532 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAATTATAGTCACTGTTGTATGTTGG 528473
Query 10030 AGGGCTGTCAATCAAATCGGATCT 10053
|||||||||||||| | |||||
Sbjct 528472 TGGGCTGTCAATCAAGTGTGATCT 528449
>seq40
Length=8742107
Score = 143 bits (158), Expect = 4e-29
Identities = 217/309 (70%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| || || |||||||| | |||||||| ||| |||||| || || || ||
Sbjct 7076050 CATCCGGCACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 7075991
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
| | ||| ||||||||||| |||| || |||| || ||||| ||||||||||
Sbjct 7075990 CCAGTGATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCC 7075931
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | |||||||||||| ||| | | || || || || || || ||||| || |
Sbjct 7075930 AGTACTCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAA 7075871
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
||| | ||||| || || |||||| ||||||| |||| || || | || || || |
Sbjct 7075870 TCTCCACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTG 7075811
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576
|| | ||||| ||| |||| |||||| || || || || || || || ||| ||
Sbjct 7075810 GATAAAACTCCAGAGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCT 7075751
Query 8577 TTTCTCCTG 8585
|||||||
Sbjct 7075750 CCTCTCCTG 7075742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716767601741440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |