Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq89 134 3e-26
seq114 129 1e-24
seq128 84.2 5e-11
>seq89
Length=7284382
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || ||||| |||||| | ||||||||| | |||
Sbjct 2822648 CAGATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAACCCAGTGAC 2822589
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| ||||| ||||| |||||||| || || || || || || |||||
Sbjct 2822588 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 2822529
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||| || || || ||||| |||||||| | || || | || || ||| ||
Sbjct 2822528 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 2822469
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || |||||||| || | || |||
Sbjct 2822468 CAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGA 2822430
>seq114
Length=3819349
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || |||||||| ||||| ||| | |||
Sbjct 3316440 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGTGAC 3316381
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| |||||||| || ||||| || ||||||||||| || ||||| || |||||
Sbjct 3316380 ACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGCAG 3316321
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||| || || || ||||| |||||||| | || || | || || ||| ||
Sbjct 3316320 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 3316261
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || |||||||| ||
Sbjct 3316260 CAGAAGGAGTCCACCCTGCATCTGGT 3316235
Score = 118 bits (130), Expect = 3e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | || || || || |||||||| ||||| ||| | |||
Sbjct 3316212 CAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGTGAC 3316153
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || ||||| || ||||||||||| || || || || |||||
Sbjct 3316152 ACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAGCAG 3316093
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || |||||||| || || ||||| ||||| || | || || | || || ||| ||
Sbjct 3316092 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACATC 3316033
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|| || || || || |||||||| || || | |||||
Sbjct 3316032 CAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAG 3315995
>seq128
Length=525773
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/110 (77%), Gaps = 3/110 (3%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||| || || || || ||||| |||||| | |||||||||
Sbjct 40070 AAAATGC---AGATCTTTGTGAAGACGCTGACGGGCAAAACCATCACCTTGGAGGTGGAA 40126
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct 40127 CCCAATGACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGG 40176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203543257686084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |