Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq51257 96.9 4e-15 seq52130 93.3 4e-14 >seq51257 Length=14659 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | ||||||||||||||| ||||| || || ||||| ||||| Sbjct 842 ATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGG 783 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || ||||| ||||| |||||||| | ||||||||||| Sbjct 782 AAGCCATAAAAGCAACGAGCCTCTGTGATTTGTACTTC 745 >seq52130 Length=109895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| ||||| | || ||||| ||| | ||||| Sbjct 100598 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCTTC 100657 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| ||||| |||||||| || ||||||||||| || || ||||| | ||||| || Sbjct 100658 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 100716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511017273933040