Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq15660 118 8e-22 seq45405 93.3 3e-14 >seq15660 Length=23540 Score = 118 bits (130), Expect = 8e-22 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||| ||| || ||||||||||| Sbjct 20454 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGG 20513 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 20514 AATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 20563 >seq45405 Length=77259 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| |||||||||||||| || ||||| | ||||| | ||| || | Sbjct 1772 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAATCGGTCCCAAATCCCCCT 1713 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | || ||||| |||||||||| Sbjct 1712 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTAGCATCCCAAA 1653 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 | | ||| || ||| || ||||||||| | ||||| || || ||||| ||| ||| Sbjct 1652 TCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACAC-ACA 1596 Query 102213 GT 102214 || Sbjct 1595 GT 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360977692426622