Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq45405 96.9 2e-15 >seq45405 Length=77259 Score = 96.9 bits (106), Expect = 2e-15 Identities = 129/176 (73%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| ||||| ||||||| ||||| | || || || ||| Sbjct 1767 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAATCGGTCCCAAATCCCCCTCCTCT 1708 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || || ||||| ||||||||||| Sbjct 1707 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGTGAGCCATTAGCATCCCAAAT 1652 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 | |||||| ||| | ||||||||| | ||||| || || ||||| |||| Sbjct 1651 CTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 1598 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 5398 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 5339 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || || | |||| ||||| Sbjct 5338 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAGTTCACCATTTAGAACATAG 5279 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 || || | | |||| || || ||||| ||||| Sbjct 5278 AATTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 5244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346521445715540