Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq52130 107 2e-18 seq51257 91.5 1e-13 >seq52130 Length=109895 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| ||||| | || || Sbjct 100598 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCTTC 100657 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 100658 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 100717 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 100718 ACCACTCTCTCACC 100731 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || || || || || | | || |||||| | | || Sbjct 95504 AAAAATCTGCATCCAGAGTGAAGACGTTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 95563 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | || ||||||||||||||||||||||| | |||||||| |||| Sbjct 95564 GATATTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 95623 Query 16008 TAAAATCAAAAGGATTTTTTGAAC 16031 | |||||||||||||||| || || Sbjct 95624 TGAAATCAAAAGGATTTTCTGCAC 95647 >seq51257 Length=14659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||||| |||| ||| || || || || || | ||| |||||||||||||| ||||| Sbjct 857 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 798 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || ||||||||||| | ||| || | ||||||||||| Sbjct 797 TCCATGGCAATCTGGAAGCCATAAAAGCAACGAGCCTCTGTGATTTGTACTTC 745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || || || ||||||| ||| | ||| || Sbjct 2921 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 2862 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 2861 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 2802 Query 16379 AC 16380 || Sbjct 2801 AC 2800 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || || Sbjct 4215 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 4156 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 4155 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462152847869200