Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq21240 95.1 8e-15 >seq21240 Length=14689 Score = 95.1 bits (104), Expect = 8e-15 Identities = 196/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 4987 TTGAGTGGGCAAAAGACACATACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 5046 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | || || | | ||| || || || ||||| || | || |||||| Sbjct 5047 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTGAC---AAGTACGACGTTTCTGACATG 5102 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | || | || ||| | || |||||||||||| ||| || || || || || ||| Sbjct 5103 AACGCACTGGCTAGGTTTGTGAAGTGGCAGTACTTCGAAGGTGACGTGTCCAAAGGTGCG 5162 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | ||| | | |||| ||| |||| || ||| Sbjct 5163 CCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 5222 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 5223 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 5270 Score = 89.7 bits (98), Expect = 4e-13 Identities = 235/355 (66%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 4398 CCTCTCAGCAATGAAGAAGCAGAATTTCCGATTGCTTACTCAATAGTGGTTTATCACAAA 4457 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 4458 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 4517 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 4518 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCGTGT 4577 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || ||||| || || |||| |||| | || || ||||| || ||| |||| Sbjct 4578 TTTGAAAATGTATTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGA 4637 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 4638 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 4695 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGT 108040 | || | ||| || || | ||||| || ||||||||||| |||||||| Sbjct 4696 ATCTAATAAATCTCTGTGGCATGGACTTTCCTATAAAGACCAACCAGGAGATGGT 4750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348005121555828