Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13401 122 1e-22 seq52130 114 2e-20 seq51257 111 2e-19 seq52971 84.2 3e-11 >seq13401 Length=7872 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || ||||||||||||||||| ||| Sbjct 1104 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1163 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | | || || || | Sbjct 1164 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATCTGTGCATCAGCAAA 1223 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||||||||| | ||| || ||| |||||| | |||| | Sbjct 1224 TGAGTGTCATAAATAATAAATCCGCAGAACAGAAGAGCTCCAGAAGCAGCAAACACCAAC 1283 Query 9408 TCCACTGTTTCACTTTGCACAAATATC 9434 || | ||| ||||| | | ||| ||| Sbjct 1284 TCTATTGTCTCACTGTAGAAAAACATC 1310 Score = 107 bits (118), Expect = 3e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| | | ||||| ||||||||||| || | |||||||||||||| ||||| Sbjct 2288 CCTGCTCCAAATCTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAGTCCAAGA 2347 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||| ||||||||||||| Sbjct 2348 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGACACATCATAGAAA 2401 >seq52130 Length=109895 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| || || | ||| | Sbjct 100596 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCT 100655 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 100656 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 100715 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 100716 CAACCACTCTCTCACC 100731 >seq51257 Length=14659 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2923 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 2864 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2863 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2804 Query 36300 C 36300 | Sbjct 2803 C 2803 >seq52971 Length=19208 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| || |||||||||||||| || || | || | ||||||| || || Sbjct 9017 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8958 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 8957 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 8899 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 8898 CTCCAGGTAGATGGC 8884 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| || || |||||| || || ||| |||||||| || || || || ||||| | Sbjct 12793 CATATGTTTCATACGGTCCTCGCTCCTTAGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 12734 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 |||||||||| || || |||| || || | || || || | || ||||| || | Sbjct 12733 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGGT 12674 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || || ||||| | || || |||||||| ||||| || | ||| | Sbjct 12673 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCGATGGGACGATGGC 12614 Query 65599 TCTTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 12613 GTCTGTTGGAGCGTTCAGC 12595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657661712366480