Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq52130 129 8e-25 seq51257 120 4e-22 seq52971 95.1 2e-14 >seq52130 Length=109895 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| || || | ||| | Sbjct 100596 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCT 100655 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 100656 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 100715 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 100716 CAACCACTCTCTCACC 100731 >seq51257 Length=14659 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 2923 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 2864 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 2863 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2804 Query 50102 CAAC 50105 | || Sbjct 2803 CTAC 2800 >seq52971 Length=19208 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| || |||||||||||||| || || | || || ||||||| || ||| Sbjct 9017 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8958 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 8957 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 8899 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 8898 CTCCAGGTAGATGGCAAAAGCCCCGGGTC 8870 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || || ||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 14299 TACCTGGAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 14240 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| ||||| || |||||||| || || |||||||| || | | | | Sbjct 14239 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 14180 Query 79179 ACTATTTCTAAGACCGTAT 79197 || ||||| | ||||||| Sbjct 14179 GCTGTTTCTGACACCGTAT 14161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717711046320080