Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16104 145 1e-29 seq23699 122 1e-22 >seq16104 Length=9793 Score = 145 bits (160), Expect = 1e-29 Identities = 213/299 (71%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 4534 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 4593 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| |||| | || || |||||||| || |||||||| | |||| Sbjct 4594 TATTGATTATTTCAAAGCCCATTTTCCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 4653 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || || || || || | ||| | || Sbjct 4654 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 4713 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | |||||||||||||| || || |||||||| | |||||| || | ||||| |||| Sbjct 4714 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 4772 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 | ||| || |||||||| ||||| | ||||| || || ||||| || |||||||| Sbjct 4773 ATAGCATCAATGTCTCCATAAAGCTCTTGCAGTTCAGCTGCCATTTCTTTCTCTCCTGT 4831 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 6543 ATGAGTCTAGCAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6602 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 6603 ACGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 6662 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || || | ||||| Sbjct 6663 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 6722 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 6723 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGCGGATACATTTCTCCATCAATCATC 6782 Query 9862 TG 9863 || Sbjct 6783 TG 6784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || |||||||| || | || || || || | |||| | Sbjct 8438 TCACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCCACTGGTGGAAGGCTTCTTGTG 8497 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| |||||||| |||||||||||||| || || || ||||| | Sbjct 8498 TAATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTATAACTATAATCACTATTGTAAGTT 8557 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAA 10447 || |||||||||||||| | ||||| ||||| ||| ||| Sbjct 8558 GGCGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAA 8598 >seq23699 Length=13663 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| ||||| || |||||||||||||| | |||| Sbjct 13391 TCTTAACTATCTCAAAGCCGGTTGCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGG 13450 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 13451 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCTACCATGC 13510 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | || ||||||| Sbjct 13511 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCA 13570 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| |||||||||||||| || Sbjct 13571 GAGCATCGATGTCTCCGTACAG 13592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707974612779680