Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq52130 114 2e-20 seq51257 111 2e-19 seq52971 87.8 2e-12 >seq52130 Length=109895 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| || || | ||| | Sbjct 100596 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCT 100655 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 100656 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 100715 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 100716 CAACCACTCTCTCACC 100731 >seq51257 Length=14659 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2923 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 2864 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2863 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2804 Query 32803 C 32803 | Sbjct 2803 C 2803 >seq52971 Length=19208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| || |||||||||||||| || || | || || ||||||| || || Sbjct 9017 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8958 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 8957 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 8899 Query 63190 TTCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 8898 CTCCAGGTAGATGGC 8884 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| ||||| || || || || || || || || | Sbjct 2428 CACTGAATACTTTCTTAGTTTCTTTGTGCAGATTGGACACTGCAATCCTCGCTGCCAGGA 2369 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 2368 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGCGTATCCA 2309 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 ||| || || || |||||| | || | || || || || ||||| | |||| Sbjct 2308 GTTCCACTGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGGTGATTT 2255 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 ||||||| || || |||||| || || ||| |||||||| || || || || ||||| | Sbjct 12793 CATATGTTTCATACGGTCCTCGCTCCTTAGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 12734 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 |||||||||| || || |||| || || | || || || | || ||||| || | Sbjct 12733 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGGT 12674 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | | || || || ||||| | || || |||||||| ||||| || | ||| | Sbjct 12673 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCGATGGGACGATGGC 12614 Query 62610 TCTTATTAGAGATTTCAGC 62628 | || ||| |||||| Sbjct 12613 GTCTGTTGGAGCGTTCAGC 12595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633139968911200