Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq45405 93.3 4e-14 >seq45405 Length=77259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || ||||| |||| ||| || || | || |||||||||||||| || ||||| Sbjct 5404 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 5345 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 ||||| | ||||| ||||| ||||||||||| || || || || || ||||| | Sbjct 5344 ACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAGTTCACCATTTAGA 5285 Query 20357 ACATAAAATTGACA 20370 ||||| ||||| || Sbjct 5284 ACATAGAATTGGCA 5271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT-GTG 20592 || ||||| ||||||||||||||||| |||| |||||||||||||||||| ||| ||| Sbjct 1761 GCTCCAAAATGCCTCCACTGGAAACCATAAATCGGTCCCAAATCCCCCTCCTCTCTGGTG 1702 Query 20593 CGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 | | || || |||||||||| | |||||||| ||||| ||||| || || Sbjct 1701 C-TGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTAGCATCCCAAATCTTCACACC 1643 Query 20653 TGTTCTTGAAAGCTC 20667 | || || ||||| Sbjct 1642 TTTTGCAGAGAGCTC 1628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441030062986480