Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16104 149 9e-31 seq23699 114 2e-20 seq6248 95.1 2e-14 >seq16104 Length=9793 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 ||||| |||| |||||| ||| |||| || || || || ||||| || || || |||||| Sbjct 6555 GTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGACGTCACAGACC 6614 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||||||||| ||||||||||| || ||||||||||| || || || || ||||||||| Sbjct 6615 CGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGGACCAAACCAAAC 6674 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||| || | ||| ||| | || || || | || | || | ||| | Sbjct 6675 ACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGGTAGATCATCTCT 6734 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || || || || || || ||||||||||| || ||||| | ||| Sbjct 6735 GCCTGAGTGTCCTTCACTGTTGGCGGATACATTTCTCCATCAATCATCTG 6784 Score = 132 bits (146), Expect = 7e-26 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 4534 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 4593 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || | | ||| || |||||||| || ||||||||| | |||| Sbjct 4594 TATTGATTATTTCAAAGCCCATTTTCCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 4653 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || || || || || | ||| | || Sbjct 4654 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 4713 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 4714 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 4773 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || ||| || || || || || || ||||| ||| Sbjct 4774 TAGCATCAATGTCTCCATAAAGCTCTTGCAGTTCAGCTGCCATTTCTTTCTCTCCT 4829 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || || | | |||| ||| | ||| Sbjct 5342 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTATTCCTGGTCGTGTATCTGGAAAGTG 5401 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | |||||| ||||||| |||||||||||||| || || ||||||||| Sbjct 5402 TCGGGCAGAAGCGGGTGCCAGTGGTAGAGAGTATTGAACTCGGCTGCGATCCGGTTCTGG 5461 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 5462 TACTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 5519 Query 9671 CGCT 9674 | || Sbjct 5520 CACT 5523 >seq23699 Length=13663 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 13417 CCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 13476 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| || || || || || ||| | Sbjct 13477 TTCAGGGAAAACGGAGCTCCGATCTCTACCATGCTTTCCCCAAAAATACCATTGGGTTGG 13536 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | || | || | ||| |||| ||| || || || || Sbjct 13537 GGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCAGAGCATCGATGTCTCCGTACAGCTCT 13596 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || ||| |||| | ||| ||| || Sbjct 13597 TCCAGCTCCGCCGCTTTCTCTTCCTCTCCTGCA 13629 >seq6248 Length=1974 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGA 9546 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 1072 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGACGA 1015 Query 9547 A-AATCA-TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || | || |||| ||| ||||||| | ||||| |||||||| |||| || | Sbjct 1014 TGAAGGAGTCGGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGC 955 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || || || ||||| | ||| |||||||| | || | || Sbjct 954 GATTCCGGTACTGGAACTGTGTCCCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGT 895 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || | || |||||||| ||||| Sbjct 894 AGTACCCGCTGAGGTGCTGGACATAGTCTTCAATGACGATCTTAATGGTCTCCCC 840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723166007114800