Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq50453 109 2e-18 seq61638 98.7 4e-15 >seq50453 Length=27497 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || ||||||||||| | || || || || || Sbjct 26333 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCCCAGCGTCAGGCCACA 26274 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | ||||| || |||||||| ||||| || |||||| Sbjct 26273 AAAGATGCTGGAACCATTGCAGGGCTCAATGTCCTCCGAATTATCAATGAGCCGACAGCA 26214 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 26213 GCTGCAATAGCCTATGGTCT 26194 >seq61638 Length=2395 Score = 98.7 bits (108), Expect = 4e-15 Identities = 198/291 (68%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || |||||||| |||||||| | || || || || || ||||||| Sbjct 1941 ATGCTGTCATCACAGTGCCCGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 1882 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || |||| | ||||| | || ||||| ||||| || |||||||||||| Sbjct 1881 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 1822 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATT 451494 |||| ||||| || ||| || ||| | | | | ||| || ||| | | | || Sbjct 1821 TAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTCATCTT 1764 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554 || || || || || ||| ||| || | ||| | ||||| ||||| | ||||| Sbjct 1763 CGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGA 1704 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| | || |||||| || ||||| || || || || |||| || Sbjct 1703 GGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974145850401176