Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq61638 304 2e-77 seq50453 210 3e-49 seq5384 95.1 2e-14 >seq61638 Length=2395 Score = 304 bits (336), Expect = 2e-77 Identities = 1039/1601 (65%), Gaps = 40/1601 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || ||||| ||||| ||||| |||||||| || || | Sbjct 767 TTCATCCTCCGCTTTGTATTTCTCCGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 825 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | |||||||| | ||| || Sbjct 826 TAAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCTTTACCCGTGCTCTTGTCCA 885 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 |||| || ||||||| |||||||| ||||| | || || | || | || || || Sbjct 886 CAGCGCTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGAGGGA 945 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| |||||| | || || || |||| ||| Sbjct 946 CTCCACGGGGTGCCGGGGGGATGCCCGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 1005 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | ||||| || || || | | || || | | || || ||| Sbjct 1006 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAG 1064 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | | Sbjct 1065 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGGGCG 1124 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || || | || || |||||||| || || ||||| || | | Sbjct 1125 GTCATCACTCCACCAGCCGTCTCTATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 1184 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 ||||| || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 1185 AGGTCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACGGCAGCGCCA 1244 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || || ||||||||||| || | || || || ||||| || || || | ||| Sbjct 1245 TAGGCAACAGCTTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1304 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || |||||||| |||| || || || | Sbjct 1305 TGTAGCAGCTTTTGGATCTTGGGGATACGAGTGGATCCACCCACCAGCACAATCTCCTGG 1364 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACAT 7222 | | || || | ||| | || || || | ||| || ||||| |||| ||| Sbjct 1365 ATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCTTTCTCCACAGGCTCCAGGGTAC-- 1422 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||| | || | || ||||| || || ||||| || ||||| || ||||| Sbjct 1423 -CACGGAAGAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTGATGGAGGTGTAGAAG 1481 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAAC 7339 |||| ||| ||||| | || || || |||||| | | ||| ||| ||||| | Sbjct 1482 TCAATGCCCTCGTAGAGGGAGTCGATCTCAATGCTAGCTTG---CGTGGAAGAGCTGAGG 1538 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | |||||| ||||| || | || | | || ||| ||| || | | Sbjct 1539 GTGCGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACCGCTCGCTTGTTGCCAGCA 1598 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||| || ||||| || || ||||| ||| || | | | || Sbjct 1599 ATGTCGCGCTTGTGCTTACGCTTGAATTCTTCCACGAAATGGTTCACCATGCGGTTGTCA 1658 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 1659 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1718 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || ||||| || || || || |||| ||| || ||||| || ||| Sbjct 1719 TCAATGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCGAAGATGAGCACATTC 1778 Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | | | ||||| || | || || || ||||| || || || || Sbjct 1779 TTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGC 1838 Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||||| |||||||| | ||| || ||||||| || || | |||||||| || || || Sbjct 1839 TCATTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 1897 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || || || | ||| || | | || || || Sbjct 1898 GCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATGACAGCATTCTGCACCTTGCGCCC 1957 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 || || | || || || || ||||| |||||||| ||||| || ||||| || | Sbjct 1958 CAGGTAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTTATCTCCTCTG- 2016 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || ||| | ||||| || | || |||| | | | || || || ||| Sbjct 2017 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTAGGCTT----GC--CAC 2070 Query 7872 CGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 | | | ||| | | | ||| | ||||| || || ||| |||| | Sbjct 2071 CCTCGTTCACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTGGGGTCATCAT 2130 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| |||||||| |||||||| | ||||| | |||||||| || | Sbjct 2131 ACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCT 2190 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || ||||| ||||| || || || || || || || || || || | || Sbjct 2191 GGTTCTTGGCAGCGTCACCGATGAGGCGCTCCGTA---TCGGTGAAGGCCACATA-GCTG 2246 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || || ||||| || || || || || || | | | || |||| Sbjct 2247 GGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGAAAGACC 2306 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || ||||| || || || || || |||||||| Sbjct 2307 CCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 2347 >seq50453 Length=27497 Score = 210 bits (232), Expect = 3e-49 Identities = 374/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || || || || || || | || ||||| ||||| || || || Sbjct 25529 GCACCGTAAGCCACAGCTTCGTCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 25588 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || | ||||| || ||||| || || || || || |||| ||||| Sbjct 25589 AAATCCTGCAGCAGCTTCTGAATCTTTGGGATACGAGTAGACCCCCCAACCAGCACGATG 25648 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| |||| || | || || || | ||||| ||||| |||| Sbjct 25649 TCATGGATCTGCGATTTGTCGAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAGG 25708 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | |||||||||||| ||| Sbjct 25709 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTGTAG 25768 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | |||| || | Sbjct 25769 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTCGATGACAGA 25828 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || ||||| || | ||||||| || | | ||| | Sbjct 25829 GTACGCTTTGCACGCTCGCATGCCGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCACTG 25888 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || ||||| ||||| || ||||| || || | | | | Sbjct 25889 ATGTCTTTCTTGTGCTTGCGTTTGAACTCAGCAATGAAGTGGTTGACCATGCGGTT---G 25945 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 25946 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 26005 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || || Sbjct 26006 TCTTCAATAGTGAGAATTGACACATCAAAAGTGCCACCTCCAAGGTCAAAGATAAGAACA 26065 Query 7577 TTC 7579 ||| Sbjct 26066 TTC 26068 >seq5384 Length=6466 Score = 95.1 bits (104), Expect = 2e-14 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGGTTC 7993 ||||| || ||||| |||||||| || ||||| | |||||| || ||| |||||| Sbjct 246 CCGATGAGCCGCTTGGCATCAAACACCGTGTTCTCGGGGTT---GGATGTGAGCTGGTTC 190 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || ||||||||||| | || || | ||| ||||| ||||| || || || Sbjct 189 TTGGCAGCGTCCCCGATCAAGCGCTCCCCCTCGGGCGTGAACGCCACGTAGGACGGCGTG 130 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 | || ||||| |||||||| || || ||||| |||||| | || | ||||||| || Sbjct 129 ATGCGGTTCCCCTGGTCGTTGGCGATGATTTCCACGCGGCCATTCTTGAAGACGCCCAC 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634639603502480