Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq50453 125 6e-23 seq61638 89.7 4e-12 >seq50453 Length=27497 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 26333 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCCCAGCGTCAGGCCACA 26274 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || ||||||||||| || || || Sbjct 26273 AAAGATGCTGGAACCATTGCAGGGCTCAATGTCCTCCGAATTATCAATGAGCCGACAGCA 26214 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 |||||| | || ||||| || || ||| Sbjct 26213 GCTGCAATAGCCTATGGTCTGGACAAA 26187 Score = 100 bits (110), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| |||| || Sbjct 27326 AGCTGTCGGAATCGATCTTGGCACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 27267 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || || ||| | || || ||| ||| ||| | ||||| Sbjct 27266 GGTGGAAATCATTGCCAATGACCAGGGCAACCGGACCACGCCAAGTTACGTTGCCTTCAC 27207 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || | |||||||| ||||| | |||| || || ||||| ||| Sbjct 27206 AGATACAGAGAGGTTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCAACC 27149 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 27148 AATACAGTTTTTG 27136 >seq61638 Length=2395 Score = 89.7 bits (98), Expect = 4e-12 Identities = 349/546 (64%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || || || | || |||| ||| Sbjct 2347 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGGGTCTTTCAGCATGGCAAA 2288 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || ||||| | ||||| Sbjct 2287 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 2228 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | ||||| || || || | || | || || |||||||| Sbjct 2227 GATACGGAGCGCCTCATCGGTGACGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2168 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || ||| | Sbjct 2167 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 2108 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || || | ||| || ||| | | ||| Sbjct 2107 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGCAAGCCTAAGGTGCAAGTG 2048 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 2047 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATAAGCTCCATGGTCC 1993 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || || | | || | | || | |||| || | Sbjct 1992 TTACCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGGCGCAAGGTGCAGAATGCTGTCA 1933 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || || || ||||||||||| | Sbjct 1932 TCACAGTGCCCGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 1873 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | |||||||||||||| || || || ||||| | || |||| Sbjct 1872 TCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 1813 Query 550527 GACTTG 550532 | |||| Sbjct 1812 G-CTTG 1808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026010708469780