Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq52971 87.8 3e-12 seq52130 86.0 1e-11 >seq52971 Length=19208 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| || ||| ||||||| | | || ||||| || || |||||||| ||||||| Sbjct 10428 CCACCTCATCTTTGCTGGTATATTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGG 10369 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 |||||| || | ||||| ||| || ||| || ||| ||||||||||| |||| Sbjct 10368 TCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTAGGGTG 10309 Query 221850 CGCCAGTCTCCAGCTGAG 221867 ||| ||||| ||||| Sbjct 10308 TGCCGGTCTCTGTCTGAG 10291 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || |||||| || || || ||||| || || || || || Sbjct 9030 CTGGTTGGTTTCAACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTC 8971 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| || || |||| ||| | | || | ||||||||| ||||| Sbjct 8970 TCTGGCTCGCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTC 8911 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| ||||||| || Sbjct 8910 CAAATGCCACGGCTCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 8867 >seq52130 Length=109895 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| || || |||||||| || ||||| ||||| || || || | Sbjct 100721 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 100662 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAG 26000 |||| ||| || ||||||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 100661 GGCTGAAGAAG-AGGGGACTGATGCCTGGACTG-ACTTTCTCCAATGAACTTATTAGCAG 100604 Query 26001 GGACGAGG 26008 || |||| Sbjct 100603 AGATGAGG 100596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928123528791680