Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq21240 239 5e-58 >seq21240 Length=14689 Score = 239 bits (264), Expect = 5e-58 Identities = 602/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || || | ||||| || || || |||||| || ||| || | Sbjct 5322 TGTGTCGCAAATACTCTTCTAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 5263 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 5262 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 5206 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | ||||| Sbjct 5205 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGCGCACCTTTGGACACGT 5146 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||||||| |||||||||||||||||||||| || | || | |||||| || ||||| Sbjct 5145 CACCTTCGAAGTACTGCCACTTCACAAACCTAGCCAGTGCGTTCATGTCAGAAACGTCGT 5086 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 5085 ACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 5027 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 5026 AGGTACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 4967 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 || | || || | |||| | || ||||| || || || || || || Sbjct 4966 CTTTCCAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 4907 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 | || | | ||| ||| | |||||| || ||||| | || | Sbjct 4906 ACTGGAGTACTGAGAGGTGGCAGCTGTTTGTCTACGCCTGTGTTCTTTATTTTACCATCA 4847 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 4846 ATAACCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 4787 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || ||||| |||| ||||| | Sbjct 4786 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACCATCTCCTGGTTGGTCTTTATA 4727 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | ||||| | || ||||| || | || || || Sbjct 4726 GGAAAGTCCATGCCACAGAGATTTATTAGATATTTCCAGTTTGAACTTCTTCTGTAGAGA 4667 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 4666 TCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATACAACACTCTCT 4607 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | ||| || || || |||||||| || |||||| ||| | ||| || Sbjct 4606 AACTGGCTGGAAATAAATACATTTTCAAAACACGAGACTATTCCCTTCACAG-CAGCAAA 4548 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 4547 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 4488 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 4487 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 4428 Query 160943 CGGAAACTC 160951 |||||| || Sbjct 4427 CGGAAATTC 4419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576770974860720