Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq61638 345 6e-90 seq50453 197 2e-45 seq5384 100 4e-16 seq13420 98.7 1e-15 seq35304 95.1 2e-14 >seq61638 Length=2395 Score = 345 bits (382), Expect = 6e-90 Identities = 1039/1586 (66%), Gaps = 41/1586 (3%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| || || || || ||||| || || || || | || ||| Sbjct 2347 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGGGTCTTTCAGCATGGCAAA 2288 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || || || ||||| || Sbjct 2287 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 2228 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || || || || || || ||| ||||||||||||| ||| Sbjct 2227 GATACGGAGCGCCTCATCGGTGACGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2168 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || || ||||||| | || | || || Sbjct 2167 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 2108 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || || | ||||| ||||||| | | | Sbjct 2107 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGC----AAGCCTAAGGTGCA 2052 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | ||||||| ||| | || |||| || || || || ||||| Sbjct 2051 AGTGGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATAAGCTCCATGGTCC 1993 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||||| ||| || | | | |||| | ||| | |||| || Sbjct 1992 TTACCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGGCGCAAGGTGCAGAATGCTGTCA 1933 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || |||||||||| ||| || || || ||||| || || || |||| | | Sbjct 1932 TCACAGTGCCCGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 1873 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | ||||||||||| || ||||| ||||| || || ||| Sbjct 1872 TCACTGGCCTTAA-TGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTAT 1814 Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || |||||||||| | || | ||| || ||||| | ||||| || | || Sbjct 1813 GGCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTCATCTTCGACTTGGGA 1754 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || ||||| || | || | ||||| | ||| || || || || ||| | Sbjct 1753 GGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCC 1694 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTG 196009 || |||||||| || ||||| ||||| || || || || || | | ||||| Sbjct 1693 ACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTC 1634 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || || ||| || ||| | ||| || ||| |||| || | || | | Sbjct 1633 GTGGAAGAATTCAAGCGTAAGCACAAGCGCGACATTGCTGGCAACAAGCGAGCGGTGAGG 1574 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAACA 196126 || || | || || ||||| | || || || || ||| ||||| ||| ||| | Sbjct 1573 CGACTGCGTACGGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCTTCCACG---CAAGCT 1517 Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186 | ||||||| || || | | || || ||||||||||| || | || || ||||| Sbjct 1516 AGCATTGAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATCACTCGTGCC 1457 Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTA---TGGAACCTGTTGAACAA 196243 || || || ||| | || ||||| | || | ||| |||| ||||| || || Sbjct 1456 CGCTTCGAGGAGCTCAATGCTGATCTCTTCCG---TGGTACCCTGGAGCCTGTGGAGAAA 1400 Query 196244 GTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGA 196303 | || ||||| || ||| | || ||| || | | || ||||| || ||||| ||| Sbjct 1399 GCTCTGCGTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGA 1340 Query 196304 TCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTA 196363 || || ||||| || ||||| ||| || |||| |||||||||| ||||| | Sbjct 1339 TCCACTCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTC 1280 Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | |||||||| |||||||| ||||| ||||| || ||||| || || ||||| Sbjct 1279 AACAAGAGCATCAACCCCGATGAAGCTGTTGCCTATGGCGCTGCCGTGCAAGCAGCTAT- 1221 Query 196424 CTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480 |||| | | ||||| | | || || || || || ||||| | ||||| | || Sbjct 1220 -CCTCATG-GGAGACAAGTCTGAGAATGTGCAGGACCTGCTGCTGTTGGATGTCACCCCT 1163 Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540 | |||||||| | || || || ||||| || ||||| | || | | ||||| Sbjct 1162 CTGTCCCTGGGCATAGAGACGGCTGGTGGAGTGATGACCGCCCTCATCAAGCGCAACACC 1103 Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGT 196599 || ||||| || || | || ||| | || || || || || || | || | || Sbjct 1102 ACCATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGT 1044 Query 196600 TCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 | | || || || || | |||| ||| || | ||||| ||| | | || || Sbjct 1043 CCTGGTCCAGGTGTACGAGGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGG 987 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | || || | ||||| || || | |||||| | || || || ||||| | || Sbjct 986 CAAATTTGACCTAACGGGCATCCCCCCGGCACCCCGTGGAGTCCCTCAGATCGAGGTCAC 927 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 || || || || || ||||| || || || |||| |||| ||||||| | || || Sbjct 926 TTTTGACATCGATGCCAATGGTATCCTGAATGTCAGCGCTGTGGACAAGAGCACGGGTAA 867 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | | ||||| || |||||||||||||| || ||| ||||| || ||||| || Sbjct 866 AGAGAACAAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATTGACCG 807 Query 196837 TATGGTTCAAGATGCGGAAAAGTACA 196862 |||||| ||||| ||||| || |||| Sbjct 806 TATGGTGCAAGAAGCGGAGAAATACA 781 >seq50453 Length=27497 Score = 197 bits (218), Expect = 2e-45 Identities = 367/539 (68%), Gaps = 0/539 (0%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || ||||| || |||||||| ||| |||||| ||||||| Sbjct 26067 AATGTTCTTATCTTTGACCTTGGAGGTGGCACTTTTGATGTGTCAATTCTCACTATTGAA 26008 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| || Sbjct 26007 GATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTT 25948 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 || || | || || || || ||||||| || ||| | |||||||| || Sbjct 25947 GACAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAACGCAAGCACAAGAAAGACATC 25888 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 || || || || ||||||| || | || ||||| || ||||| || || ||| Sbjct 25887 AGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACGGCATGCGAGCGTGCAAAGCGTACT 25828 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || || || | | || | | |||| |||||||| | | ||| || ||||||||| Sbjct 25827 CTGTCATCGAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTC 25768 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || ||| | |||||| | || || ||||||||| | || |||| |||| | Sbjct 25767 TACACATCCATTACCAGAGCTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCGTGGCACC 25708 Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 |||| ||||| ||| | | || || || || || | || || || || | |||| Sbjct 25707 CTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTCGACAAATCGCAGATCCATGAC 25648 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 || || || || || || || || ||||| || |||||||| || |||| ||| Sbjct 25647 ATCGTGCTGGTTGGGGGGTCTACTCGTATCCCAAAGATTCAGAAGCTGCTGCAGGATTTC 25588 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 |||||| ||||| | ||||| | ||||| || || ||||| || ||||| ||||| Sbjct 25587 TTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCTGACGAAGCTGTGGCTTACGGTGC 25529 Score = 116 bits (128), Expect = 5e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| ||||| || | Sbjct 26326 ATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCCCAGCGTCAGGCCACAAAAGATG 26267 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||| || || || |||| | ||||||||||||| || ||||| |||||| Sbjct 26266 CTGGAACCATTGCAGGGCTCAA-TGTCCTCCGAATTATCAATGAGCCGACAGCAGCTGCA 26208 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || || |||||||||||||| || Sbjct 26207 ATAGCCTATGGTCTGGACAAAAA 26185 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | | || | ||||| ||| | | || || | || || | Sbjct 24692 GTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 24634 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| |||||||||||||||| || |||||| | || ||| ||||| || Sbjct 24633 GACTGGTATTCCCCCTGCACCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 24574 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| ||||||| | ||||| Sbjct 24573 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 24514 Query 196789 TGTGATTACCAATGACAAGGG 196809 || ||||||||||| || Sbjct 24513 CACAATAACCAATGACAAAGG 24493 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | || |||||| | || || || || || ||||||||||||| ||| ||| Sbjct 27326 AGCTGTCGGAATCGATCTTGGCACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 27267 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || || | |||||||| || ||||| || || ||| ||||||||||| || Sbjct 27266 GGTGGAAATCATTGCCAATGACCAGGGCAACCGGACCACGCCAAGTTACGTTGCCTTCAC 27207 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||||| || | | | || ||||| ||||| || || || ||||| || | ||| Sbjct 27206 AGATACAGAGAGGTTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATGAATCCAACCAA 27147 Query 195478 TACTGTCTTTG 195488 ||| || |||| Sbjct 27146 TACAGTTTTTG 27136 >seq5384 Length=6466 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 |||||||| ||||| || ||||| || ||| | ||||| || || |||| || | ||| Sbjct 2875 AAGGATAATCATCTCCTGGGAACGTTTGATCTCACGGGAATCCCTCCTGCCCCTCGCGGT 2934 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || || |||||| | ||| ||| || ||||| | || ||||| || ||||||||| Sbjct 2935 GTCCCCCAGATTGAGGTTACCTTTGAAATAGATGTGAACGGAATCCTCCGTGTCACAGCT 2994 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | ||||| ||| || ||||| || ||||| Sbjct 2995 GAAGACAAGGGCACTGGGAACAAGAACAAGATCACGATCACAAATGATCAGAATCGGCTG 3054 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | || || ||||| | |||||| | ||||| ||||||| Sbjct 3055 ACGCCAGAAGAGATTGAGAGGATGGTTAATGATGCTGAAAAGT 3097 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||| ||||||||||| |||||||||| ||| || | || | | | Sbjct 1168 AACGGCTGCTGCCATTGCTTATGGACTGGACAAGAGAGAGGGTGAGAAGAACATCCTCGT 1227 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | ||||| | |||||||| || ||||||||||| || |||| ||||| ||| | Sbjct 1228 G---TTTGACTTGGGTGGTGGAACTTTTGATGTCTCCCTCCTCACAATTGACAATGGAGT 1284 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||| ||||| || ||||| ||||| || || Sbjct 1285 CTTTGAAGTCGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 1338 >seq13420 Length=13264 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||| | ||||||||||| Sbjct 249 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGTTAGAAGATGGACG 308 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| |||||| ||||||| Sbjct 309 CACGCTATCTGACTACAACATTCAAAA 335 >seq35304 Length=361 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 252 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 311 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCC 171971 || ||||| || || | || |||||||| || || |||||||||||||| Sbjct 312 GATACAATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCC 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657351553399840