Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq21240 179 4e-40 >seq21240 Length=14689 Score = 179 bits (198), Expect = 4e-40 Identities = 552/846 (65%), Gaps = 22/846 (3%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || || || || || ||||| Sbjct 5233 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 5174 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | ||| || || ||| |||| |||||||| || |||||| Sbjct 5173 GGTGGGTAGGGCGCACCTTTGGACACGTCACCTTCGAAGTACTGCCACTTCACAAACCTA 5114 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||||||||||| |||| || | || || || || || Sbjct 5113 GCCAGTGCGTTCATGTCAGAAACGTCGTACTTGT-CACTAGAAGAAACTGCACCCGGGAC 5055 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 5054 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTATGTGTCTTTTGC 4995 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTAT---AGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | | ||||| || | || Sbjct 4994 CCACTCAATGAACT---TAAGTATTTTGCTGCTTTCCAATATGTATTCTACAAATCTTCT 4938 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| || || | | | ||| || ||| ||| Sbjct 4937 GCTAACTACAAAATAGGCACTACCAGAAAAAACTGGAGTACTGAGAGGTGGCAGCTGTTT 4878 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | ||| | || || ||||||| | Sbjct 4877 GTCTACGCCTGTGTTCTTTATTTTACCATCAATAACCTCATGGTGTTTTTTCCACCTTAC 4818 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 4817 TTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 4762 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | |||||||| | |||||||| | |||||||| |||| |||||||| | Sbjct 4761 TTAATTTCTCTACCATCTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGATTTA 4702 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | ||||||||| || || || ||| ||||| | | ||||| | || |||| Sbjct 4701 TTAGATATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCT 4642 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || ||||| ||| ||| | ||| ||||| | Sbjct 4641 GCACTCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAATACATTTT 4582 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | |||||||| ||||| ||| |||| || || | || | || || ||| | | Sbjct 4581 CAAAACACGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 4525 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 4524 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 4465 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || || || || || || || || || || || | Sbjct 4464 TCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATCGGAAATTCTGCTTCTTCATTGC 4405 Query 162989 TGAGAG 162994 |||||| Sbjct 4404 TGAGAG 4399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577982833091200