Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq21975 123 8e-25 seq40953 114 4e-22 seq27342 114 4e-22 seq1570 109 2e-20 seq41112 98.7 3e-17 seq18232 91.5 5e-15 >seq21975 Length=47275 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 26005 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 26064 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 26065 CCCGGGCTTCAGC 26077 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 39277 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 39218 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 39217 CCCGGGCTTCAGC 39205 >seq40953 Length=911 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| Sbjct 511 GGCTGAAGTAGCTCAGCTGGGAGACCATTAGACTGAAGATCTAAAGGTCCCTGATTCAAC 570 Query 2828 CCCGGGCTTCAGC 2840 || |||||||||| Sbjct 571 CCAGGGCTTCAGC 583 >seq27342 Length=606 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| Sbjct 9 GGCTGAAGTAGCTCAGCTGGGAGTGCATTAGACTGAAGATCTAAAGGCCCCTGGTTCAAC 68 Query 2828 CCCGGGCTTCAGC 2840 || |||||||||| Sbjct 69 CCGGGGCTTCAGC 81 >seq1570 Length=1394 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 367 GGCTGAAGTAGCTCAGCTGGGAGACTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 308 Query 2828 CCCGGGCTTCAGC 2840 || |||||||||| Sbjct 307 CCGGGGCTTCAGC 295 >seq41112 Length=23639 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 19270 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 19329 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 19330 CCGGGTTTCGGC 19341 >seq18232 Length=628 Score = 91.5 bits (100), Expect = 5e-15 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||||||| ||| ||||||| | |||||||||||||||||| |||||||||||||| Sbjct 532 GGCTGAAGTAGATCATCTGGGAGACCGTTAGACTGAAGATCTAAAAGTCCCTGGTTCAAC 591 Query 2828 CCCGGGCTTCAGC 2840 | || ||||||| Sbjct 592 CTGGGCCTTCAGC 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15838830840690