Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq52130 138 2e-27 seq51257 129 8e-25 seq52971 93.3 6e-14 >seq52130 Length=109895 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 100596 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCT 100655 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 100656 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 100715 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 100716 CAACCACTCTCTCACC 100731 >seq51257 Length=14659 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| |||||||||||||||| || | || | Sbjct 2923 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 2864 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 2863 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2804 Query 39759 CAAC 39762 | || Sbjct 2803 CTAC 2800 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 4212 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4153 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 |||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 4152 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 4105 >seq52971 Length=19208 Score = 93.3 bits (102), Expect = 6e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||| |||||| || | ||| |||||||| || || || || Sbjct 12800 GAACCCTCATATGTTTCATACGGTCCTCGCTCCTTAGCAAGTTCACAGCTGGCTTCCAAA 12741 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| |||||||| || || ||||||| || || | || || || |||| || Sbjct 12740 GCACCATAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCA 12681 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | | || || |||||||||| ||||| || ||||| ||||| || Sbjct 12680 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCGATGGGA 12621 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 | ||| | | || || | |||||| Sbjct 12620 CGATGGCGTCTGTTGGAGCGTTCAGC 12595 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||| ||||| || || |||||| || | || || || || || || | Sbjct 16669 TCCACCCGAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 16610 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||| ||||| ||||| || | ||| | | Sbjct 16609 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTCAGAATGGTTT 16550 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 |||| | || ||||| | |||||| | | ||| || | ||||| |||| Sbjct 16549 TTTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCATCAGGAA 16499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686375398144080