Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq52971 82.4 1e-10 seq52130 82.4 1e-10 >seq52971 Length=19208 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 |||||||| || | ||| | || || |||||||| |||| || || |||||| | Sbjct 10399 ATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCGG 10340 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| | || ||||||||||||||||| || || ||||| ||||| |||| | ||| Sbjct 10339 TTGCAAGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCTGTCTGAGATTCAATGATA 10280 Query 111410 GCCTTCCA 111417 || | ||| Sbjct 10279 GCATACCA 10272 >seq52130 Length=109895 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 100596 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGTCCCCTCTTCT 100655 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 100656 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 100714 Query 122797 GCAA 122800 |||| Sbjct 100715 GCAA 100718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627544317451200