Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq45405 127 2e-24 >seq45405 Length=77259 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| |||| ||||||||||| || ||||| || | Sbjct 5239 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAATTCTATGTTCTAAATGGTGAAC 5298 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||||| |||||||| | || ||||| ||||| |||| ||||| ||||| |||| Sbjct 5299 TGTCTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTG 5358 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||||||| |||||||| || |||||| Sbjct 5359 CCAGCTATTCACTGCTCACATACATGATTGCCCATGTC 5396 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||| ||||| ||||| |||| Sbjct 5396 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCTAG 5337 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | |||||||| ||||| ||||| || ||||| || ||||| Sbjct 5336 TCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAGTTCACCATTTAGAACATAGAA 5277 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 |||||| |||| ||||| || || | |||||||||| Sbjct 5276 TTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 5239 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | || || || || || | Sbjct 1623 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGCTCACGTGAGTTCC 1682 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| ||| | || || |||| Sbjct 1683 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCGATTTATGGTTTCC 1742 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 1743 AGTGGAGGCATTTTGGAGCAGAATA 1767 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || | ||| ||||| || |||||||| Sbjct 1767 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAATCGGTCCCAAATCCCCCTCCTCT 1708 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 1707 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTAGCATCCCAAATCTTC 1648 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 1647 ACACCTTTTGCAGAGAGCTCTTTGG 1623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447914313039840