Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq45405 96.9 3e-15 seq15660 96.9 3e-15 >seq45405 Length=77259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 ||||||||||||||||| || || | |||||||| || ||||| || ||| |||| ||| Sbjct 1755 AAATGCCTCCACTGGAAACCATAAATCGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 1697 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 1696 ACCCTGCTTATCCAGGAACTCACGTGAGCCATTAGCATCCCAAATCTTCACACCTTTTGC 1637 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 1636 AGAGAGCTCTTTGGCATTTGTAGAACC 1610 >seq15660 Length=23540 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | ||||| | |||||| || || Sbjct 20455 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 20514 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 20515 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 20562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405855689018092