Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq45405 82.4 3e-11 >seq45405 Length=77259 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | |||||||||||| || || ||| | || || Sbjct 5244 ATGGCTTTGCCTCCATGCCATGCCCTTTGCCAATTCTATGT-TCTAAATGGTGAACTGTC 5302 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | |||||| |||||| || ||| | || || || || || |||||||| Sbjct 5303 TTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCAG 5362 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| || | ||||||| Sbjct 5363 CTATTCACTGCTCACATACATGATTGC 5389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189955766418420