Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq16104 167 3e-36 seq23699 105 1e-17 >seq16104 Length=9793 Score = 167 bits (184), Expect = 3e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 6543 ATGAGTCTAGCAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6602 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 6603 ACGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 6662 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || || | ||||| Sbjct 6663 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 6722 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 6723 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGCGGATACATTTCTCCATCAATCATC 6782 Query 9484 TG 9485 || Sbjct 6783 TG 6784 Score = 140 bits (154), Expect = 5e-28 Identities = 212/299 (71%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 4534 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 4593 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || |||| | || || |||||||| |||||||||||| | |||| Sbjct 4594 TATTGATTATTTCAAAGCCCATTTTCCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 4653 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||| || || || | ||| | || Sbjct 4654 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 4713 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCC 8527 | |||||||||||||| || || |||||||| | |||||| || | |||||||||| Sbjct 4714 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 4772 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | ||| || | |||||| ||||| | ||||| || || || || || |||||||| Sbjct 4773 ATAGCATCAATGTCTCCATAAAGCTCTTGCAGTTCAGCTGCCATTTCTTTCTCTCCTGT 4831 >seq23699 Length=13663 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 13415 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 13474 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 13475 CCTTCAGGGAAAACGGAGCTCCGATCTCTACCATGCTTTCCCCAAAAATACCATTGGGTT 13534 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| || || | || || || | || | ||||| ||| |||| ||||||||| || Sbjct 13535 GGGGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCAGAGCATCGATGTCTCCGTACAG 13592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716320127242880