Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq182 95.1 1e-14 seq2470 84.2 3e-11 >seq182 Length=5234274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || ||||||| ||||| | |||||| || ||||| || |||||||| || ||||| ||| Sbjct 1130726 AGCCCCGTGACATGGGCAATCATGTATGTAAGCAGTGAATAGCTGGCAATATTGAAAGGC 1130785 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||| || || || | ||| || || ||||| || | || || Sbjct 1130786 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCACGACAATTCACCATTTAGA 1130845 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 || ||||||||||| || ||||| || |||| |||||| Sbjct 1130846 ACATAGAACTGGCAAAGAGCATGGCATGGAGGCAAAGCCATG 1130887 >seq2470 Length=606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 156364 CCCGCACTGCCCGGCCAGGGCCATCTCCGCGCAG-CAGGCGATCAGCCCCCCGTCGCTCA 156422 |||||| | ||||| | |||||||||| |||| ||| | | ||||||||||||||||| Sbjct 109 CCCGCAGTTGCCGGCGAAGGCCATCTCCA-GCAGGCAGCCCAGCAGCCCCCCGTCGCTCA 167 Query 156423 CGTCGTGGCCCGCGGTCACCAGCCCGC 156449 |||||||||||||| ||| || ||||| Sbjct 168 CGTCGTGGCCCGCGCTCAGCA-CCCGC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589922266262040