Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq202 150 2e-31 seq1281 109 7e-19 >seq202 Length=7357953 Score = 150 bits (166), Expect = 2e-31 Identities = 187/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| | |||||||||||| || || |||||| ||| ||| Sbjct 103215 GAACTTCTCAAAGTTCCAGGAGATGTCGTTGCGGCAGACGGGGGACCAGATGATGTACTG 103156 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| ||||| | ||||||| || ||||| |||||| ||||| Sbjct 103155 TGGGTTGGTCATGAGCGAGGAGGGGTCGTCGTGCGGGAAAGGCAGCGCCTCTTTCAGGAA 103096 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || ||| || || || || | ||||| ||||||||||||||||| | || || | Sbjct 103095 GGTGAAAAGGGGGTGCGCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGATGAAATC 103036 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 |||| | | ||||| |||||||| ||||||| ||| ||| ||| |||||| | || Sbjct 103035 GGGCTTGTACCCGTTGCCAGGACGAACGTGCTCCAGCGAAAGCAGGATCTCCTCGTTTGT 102976 Query 83383 GGCGTTTTCCTGGTGA 83398 ||| ||||||||| || Sbjct 102975 GGCATTTTCCTGGGGA 102960 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| |||||||| || || ||||| ||||| || ||||||||| | || || Sbjct 102829 CCTGGTGCCCGAACTGATTGCAGGGGAAGCCAAGGACCCGCAGCCCCCGGGGGCCGTAGC 102770 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||| | ||| | | || ||| || | |||||||| ||||| | Sbjct 102769 GCCGCTGCAGCTCGTTGAGCTGCTGGAAGTCGCGGGTGGTTGTGCCTCAGAGCGACGCCA 102710 Query 83511 CGTT 83514 |||| Sbjct 102709 CGTT 102706 >seq1281 Length=623854 Score = 109 bits (120), Expect = 7e-19 Identities = 219/312 (70%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||| ||||||| || || ||| || |||| ||||||| | Sbjct 115331 GAGGAGGCGCTGGATGTCAGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 115388 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | |||||||| |||||||||||||||||||| | |||| | Sbjct 115389 CGGAAAGGTTCCCCTTCGGGACCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAG 115448 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || | ||| || ||||| | || |||| ||| || || |||| | ||||| Sbjct 115449 CGCCGCACGGGGCTCCAGGTGAGGAAGCGGGGCTCGGCCATCAGATGTGC-CGCCTCGTC 115507 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 ||| | |||||| |||| || ||| |||| |||| || || || ||| || Sbjct 115508 AGCCGGCTCAGGCAGGTGAGCCT-TC--AGGTAGGCAAAGACAGGGTGGGTGTCCT-GC- 115562 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| |||||| | ||||| ||||||||||| ||| || || Sbjct 115563 CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCCGC 115622 Query 83348 ACGTGCTTCAGG 83359 || ||||||||| Sbjct 115623 ACATGCTTCAGG 115634 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 115758 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 115815 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| || || |||| |||||| | ||||||||||||| Sbjct 115816 GCGGGCT-TGCAGCTGGTTGAGCTGGGTATAATCCCTCACCGTGGTGCCTCAGAGGGACG 115874 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| ||||| | || |||||||| || Sbjct 115875 CCACGTTCTCAATGAGGACCACGCGGCCCCGGAA 115908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608637363728040