Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq182 93.3 3e-14 >seq182 Length=5234274 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/176 (73%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| || || | || || || ||| Sbjct 1133777 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGCCCCAAATCCCCCTCCTCT 1133836 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 1133837 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGCGATCCATTAGCATCCCAAAT 1133892 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 | |||||| || | ||||||||| | ||||| || || ||||| |||| Sbjct 1133893 CTTCACACCCTTGGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 1133946 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| || Sbjct 1130732 GTGACATGGGCAATCATGTATGTAAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCC 1130791 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || | | |||| ||||| Sbjct 1130792 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCACGACAATTCACCATTTAGAACATAG 1130851 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 1130852 AACTGGCAAAGAGCATGGCATGGAGGCAAAGCCAT 1130886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346695452065070