Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1104 134 1e-26 seq1769 111 1e-19 >seq1104 Length=759006 Score = 134 bits (148), Expect = 1e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| || || || |||||||| ||| || ||||| ||| || | Sbjct 139129 CAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 139188 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | |||||||||||| || ||||| |||||||| | Sbjct 139189 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 139248 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 139249 TCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 139308 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| || || ||||| ||||||||| Sbjct 139309 CGGTCAGGGTCTTCACAAAGATCTGCATG 139337 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| ||| || ||||| ||| || | Sbjct 140269 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 140328 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | |||||||||||| || ||||| |||||||| | Sbjct 140329 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 140388 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 140389 TCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 140448 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || |||||||| |||||||| Sbjct 140449 CGGTCAGGGTCTTTACAAAGATCTGCAT 140476 Score = 122 bits (134), Expect = 8e-23 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| ||| || ||||| ||| || | Sbjct 139585 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 139644 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | |||||||||||| || ||||| |||||||| | Sbjct 139645 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 139704 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 139705 TCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 139764 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| || || ||||| ||||||||| Sbjct 139765 CGGTCAGGGTCTTCACAAAGATCTGCATG 139793 Score = 122 bits (134), Expect = 8e-23 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| ||| || ||||| ||| || | Sbjct 139813 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 139872 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | |||||||||||| || ||||| |||||||| | Sbjct 139873 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 139932 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 139933 TCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 139992 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| || || ||||| ||||||||| Sbjct 139993 CGGTCAGGGTCTTCACAAAGATCTGCATG 140021 Score = 122 bits (134), Expect = 8e-23 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| ||| || ||||| ||| || | Sbjct 140041 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 140100 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | |||||||||||| || ||||| |||||||| | Sbjct 140101 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 140160 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || ||||||||||| ||| | || |||| Sbjct 140161 TCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 140220 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| || || ||||| ||||||||| Sbjct 140221 CGGTCAGGGTCTTCACAAAGATCTGCATG 140249 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| ||||| || || || ||||||||||| | || || ||| Sbjct 139352 CAGCACAAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATC 139411 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| || | |||||||||||| || ||||| |||||||| Sbjct 139412 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139471 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||| || || | || | |||||| || ||||||||||| ||| | || Sbjct 139472 CTGGATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 139531 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || ||||| ||||||||| Sbjct 139532 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 139565 >seq1769 Length=296722 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| ||||| |||||||| ||| | |||||| ||| Sbjct 35391 CAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCATC 35450 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| | | ||||||||| || || |||||||||||||| Sbjct 35451 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 35510 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 35511 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 35570 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 35571 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 35604 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| || || |||||||| || | |||||| || Sbjct 35619 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCGTC 35678 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| | | ||||||||| || || |||||||||||||| Sbjct 35679 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 35738 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 35739 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 35798 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 35799 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 35832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433719625610092