Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq541 172 6e-38 >seq541 Length=1362632 Score = 172 bits (190), Expect = 6e-38 Identities = 166/211 (79%), Gaps = 18/211 (9%) Strand=Plus/Plus Query 1930 AGGCCGCGGTCGGCCGGCACCC-GCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCT 1988 |||||||||||||||||| ||| |||| ||||||||||||||| ||| |||||||||||| Sbjct 920406 AGGCCGCGGTCGGCCGGCTCCCCGCCACTGCCGCCGCGAAGAGCTCGTCTCTGTCAGCCT 920465 Query 1989 ---CGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgc----------ccccagcaga 2035 |||||||| |||||| | || ||| |||||||| |||||||||| Sbjct 920466 CGGCGGCGGCGGCCGGGAACGGAGGGAGGCGCCCCCGCGCCCGCGGGGGACCCCAGCAGA 920525 Query 2036 gcaacacgggagcggcgcccccggggcaa--cccccgcgccccccTGCGCCGTGGG--GC 2091 |||| |||||||||||||| ||||| || || |||||| |||| || ||||| || Sbjct 920526 GCAAAACGGGAGCGGCGCCGCCGGGATAAACCCACCGCGCTTCCCTCAGCTGTGGGGCGC 920585 Query 2092 GCGCGGACGGCGTCGCTCCCACACGCGCGGC 2122 |||||| ||||| |||||| |||||||| || Sbjct 920586 GCGCGGCCGGCGCCGCTCCGACACGCGCAGC 920616 Score = 172 bits (190), Expect = 6e-38 Identities = 166/211 (79%), Gaps = 18/211 (9%) Strand=Plus/Minus Query 139498 GCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGC--CCCACGGCGCAggggggcgcggggg 139555 || |||||||| |||||| ||||| |||||||| ||||| || |||| |||||| || Sbjct 920616 GCTGCGCGTGTCGGAGCGGCGCCGGCCGCGCGCGCCCCACAGCTGAGGGAAGCGCGGTGG 920557 Query 139556 --ttgccccgggggcgccgctcccgtgttgctctgctgggg----------gcgcggggc 139603 || ||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 920556 GTTTATCCCGGCGGCGCCGCTCCCGTTTTGCTCTGCTGGGGTCCCCCGCGGGCGCGGGGG 920497 Query 139604 cgcgcgcCGCATCTCCCGGGCGCCGCCG---AGGCTGACAGAGGCGAACTCTTCGCGGCG 139660 ||| || | |||||| |||||||| |||||||||||| ||| |||||||||||| Sbjct 920496 CGCCTCCCTCCGTTCCCGGCCGCCGCCGCCGAGGCTGACAGAGACGAGCTCTTCGCGGCG 920437 Query 139661 GCAATGGC-GGGTGCCGGCCGACCGCGGCCT 139690 ||| |||| ||| |||||||||||||||||| Sbjct 920436 GCAGTGGCGGGGAGCCGGCCGACCGCGGCCT 920406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 282/433 (65%), Gaps = 63/433 (15%) Strand=Plus/Minus Query 139696 CGAGGACCCCAGGGCGGATGGGGGCGAGAGGACCCCTCGCTGACGtttttttttGTTTGC 139755 ||||||||||||||||| ||| ||| | |||||||||||||||||||||| | || Sbjct 920330 CGAGGACCCCAGGGCGGGCCTGGGTGAGGAGCCCCCTCGCTGACGTTTTTTTTTAATGGC 920271 Query 139756 CGTGGAGCCCCTTTCGGTCCTTTCTCCCGCGTCCGCCCCANNNNNNNNNNNNNNNNNNNN 139815 | | |||||| ||||| ||| | ||||| Sbjct 920270 AG---ACCCCCTT------CTTTCCCCCAC-----CCCCAC------------------- 920244 Query 139816 CCCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACAG----CGGGCGGA 139870 |||| |||| ||||||| | ||||||||||||||||||| |||||| |||||| Sbjct 920243 CCCC--GGGCTACTCCCCTCGTCCGCTGAAAGTCAGCGAGTAAAACAGCGGACGGGCGCG 920186 Query 139871 GGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT-T 139929 |||||||| ||| ||| | ||||||||||| || || | |||| Sbjct 920185 GGGAGCGCAGCGGCAG---------------CCATTAGGGTTAGTCATTGCAGGGCCTCC 920141 Query 139930 CCACCCGCCACGTGTGCCGGGGGAACCCCGCGTGGGGC-TCTTGTAGCTTCCTCCGCCTA 139988 |||||||||||| | ||||| |||| || | | |||| ||| || | | | | Sbjct 920140 CCACCCGCCACGCGACTTGGGGGTGCCCC-CGACCGCCTTCTTAAAGCCTC--CAGGCCA 920084 Query 139989 CGCCCACCGCGCGCCTATTGGCCGG-GCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGG 140047 ||||| |||||| || ||||| ||| | || || | | || ||||| |||| | Sbjct 920083 CGCCCGCCGCGCCCCCATTGGTCGGATGGGCACCCTCCTCCTCCGCCATTGGTCGCGGCG 920024 Query 140048 AGGAGAGCGAGCAG-AGAGGGGCCGGTGCGGGAGTTTGGAACTCCGCGGTCATTCATCTC 140106 |||||| | || | || | | | ||||||||||||||| | || ||||| || Sbjct 920023 GGGAGAGGGGGCGGTAGCGAGAGAGTGGCGGGAGTTTGGAACGCTCGGGCCATTCGTCCA 919964 Query 140107 CCGCCACGCCCCA 140119 ||| | ||| ||| Sbjct 919963 CCGGC-CGCACCA 919952 Score = 86.0 bits (94), Expect = 7e-12 Identities = 280/433 (65%), Gaps = 63/433 (15%) Strand=Plus/Plus Query 1501 TGGGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCCGCACCGGCCCCTCT-C 1559 ||| ||| | ||| || ||||| || | ||||||||||||||| | | | || | Sbjct 919952 TGGTGCG-GCCGGTGGACGAATGGCCCGAGCGTTCCAAACTCCCGCCACTCTCTCGCTAC 920010 Query 1560 TGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGC-CCGGCCAATAGG 1618 || | |||||| | |||| ||||| || | | || || | ||| ||||| || Sbjct 920011 CGCCCCCTCTCCCCGCCGCGACCAATGGCGGAGGAGGAGGGTGCCCATCCGACCAATGGG 920070 Query 1619 CGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGA-GCCCCACGCGGGGTTCCCCCGGCAC 1677 |||||| |||||| | | | || ||| |||| | | || |||| ||||| | Sbjct 920071 GGCGCGGCGGGCGTGGCCTG--GAGGCTTTAAGAAGGCGGTCG-GGGGCACCCCCAAGTC 920127 Query 1678 ACGTGGCGGGTGGA-AGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTGATGGTACTG 1736 |||||||||||| |||| | || || ||||||||||| | ||| Sbjct 920128 GCGTGGCGGGTGGGGAGGCCCTGCAATGACTAACCCTAATGG---------------CTG 920172 Query 1737 TCGCCGCGCTCCCTCCGCCCG----CTGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGGA 1791 ||| |||||||| |||||| |||||| ||||||||||||||||||| | |||||| Sbjct 920173 CCGCTGCGCTCCCCGCGCCCGTCCGCTGTTTTACTCGCTGACTTTCAGCGGACGAGGGGA 920232 Query 1792 GCCGCCCCAGGGGGCGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGGAGAAAGGACCGA 1851 | |||| ||||| || | ||| ||||| Sbjct 920233 GTAGCCC--GGGGG------------------------TGGGGGTGGGGGAAAG------ 920260 Query 1852 AAGGGGCTCCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATCCGC 1911 |||||| | | || | |||||||||||||||||||||| | ||| ||| |||| Sbjct 920261 AAGGGGGT---CTGCCATTAAAAAAAAACGTCAGCGAGGGGGCTCCTCACCCAGGCCCGC 920317 Query 1912 CCTGGGGTCCTCG 1924 ||||||||||||| Sbjct 920318 CCTGGGGTCCTCG 920330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568919767994640