Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq1420 259 5e-64 >seq1420 Length=1209231 Score = 259 bits (286), Expect = 5e-64 Identities = 309/424 (73%), Gaps = 0/424 (0%) Strand=Plus/Plus Query 125090 CCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGG 125149 |||||| || ||| ||||||||||||||| || || |||||||||| |||| |||| Sbjct 714547 CCGCCCCGCCCCCGCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCCCCGCTCCTCGG 714606 Query 125150 CCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGT 125209 ||||||| |||||||||||| || ||| ||||| ||||| || | ||||| | ||| Sbjct 714607 CCAGGTAGGCGGCCAGCGCTTCGACCAGGCGGCGCGGCCCGTCGCCGCAGCCCCTCTCGG 714666 Query 125210 ACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGA 125269 |||||| | ||||||| |||| ||| ||| | |||||| || |||||||||| Sbjct 714667 CCAGCGCGGCGGCCAGCGTGCCGGCGAAGACCACCAGCGCCAGCAGCCGGCCCCAGTTGA 714726 Query 125270 AGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCG 125329 ||||| ||| | || || | | |||| | |||| || | ||| || ||| Sbjct 714727 GGCCGCCGTCGGCCTCCAGTTGCGCCGCCACCCGCCCCAGCAGCGCCGCCGCCTCCCGCG 714786 Query 125330 TGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCT 125389 || | | ||| | ||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 714787 GCTCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGCCGCTCCAGCT 714846 Query 125390 CGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGC 125449 || ||||||| ||||| || || || || ||| |||| | ||| | Sbjct 714847 CGCCCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCCCGGCGCCGCCAC 714906 Query 125450 AGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCA 125509 || ||||||||||| ||||||||||||| |||||| || |||||||| ||| | | || Sbjct 714907 CGCGATGCTGGAAGTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAGCCCGGCA 714966 Query 125510 TGGC 125513 |||| Sbjct 714967 TGGC 714970 Score = 253 bits (280), Expect = 2e-62 Identities = 308/424 (73%), Gaps = 0/424 (0%) Strand=Plus/Minus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| ||||||||||| Sbjct 714970 GCCATGCCGGGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAT 714911 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || | ||| | |||| ||| || || || |||||||| | ||||||||| || Sbjct 714910 CGCGGTGGCGGCGCCGGGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 714851 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 |||||||||||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 714850 GGCGAGCTGGAGCGGCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 714791 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || |||| | |||| | | || || | ||| || Sbjct 714790 GAGCCGCGGGAGGCGGCGGCGCTGCTGGGGCGGGTGGCGGCGCAACTGGAGGCCGACGGC 714731 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | ||| ||| |||| ||||||| | ||| Sbjct 714730 GGCCTCAACTGGGGCCGGCTGCTGGCGCTGGTGGTCTTCGCCGGCACGCTGGCCGCCGCG 714671 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| | ||||| | || ||||| ||||| ||| || |||||||||||| ||| Sbjct 714670 CTGGCCGAGAGGGGCTGCGGCGACGGGCCGCGCCGCCTGGTCGAAGCGCTGGCCGCCTAC 714611 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| |||||||||| || || ||||||||||||||| ||| || || Sbjct 714610 CTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGCGGGGGCGGG 714551 Query 157503 GCGG 157506 |||| Sbjct 714550 GCGG 714547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509050651075200