Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq114 378 5e-100 seq221 104 2e-17 >seq114 Length=360502 Score = 378 bits (418), Expect = 5e-100 Identities = 695/1014 (69%), Gaps = 10/1014 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||||| || | ||||| | ||||||||| || ||||||| ||||| Sbjct 81662 TACCTGAACATGACGAAGGACTGCAGGAGCTTCAAGGAGACGCGGCAGTTCATCGAGTTC 81721 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| | || ||| ||| ||||||||||||||||| ||||| |||| | || Sbjct 81722 CCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAACAAT 81781 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || ||||| ||| | || | || |||| |||||| | ||||| || Sbjct 81782 ATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGCATC 81841 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || ||||||||| | | ||| | ||||| || |||||| | ||||| Sbjct 81842 CACGTTGACAGGAAGTCCCCGGCTATCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 81901 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||||||||| |||| |||| | ||| |||||| ||||||||||||||| | Sbjct 81902 TTCCCCAATATCTTTGTGGCTACCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 81961 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| |||||||| ||||| ||| | ||| || | |||||| | |||||||| | || Sbjct 81962 CTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCATGGCACTAT 82021 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || ||||| || || |||||||| |||||||| || ||||| ||| ||| Sbjct 82022 CTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAGTCAGCGCC 82081 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| | || ||| |||||| |||||||| ||| || || | ||||| Sbjct 82082 CTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTCCAAGCGG 82141 Query 108108 aaTCGCTGGAAATACCGC--TATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TG 108164 |||||| | || | | || | | ||| || ||| |||| | | | Sbjct 82142 GCACGCTGGCAGTATCACCACATAGTGGGGCAGTTCATCT---CCCGGACAGCCACAGAG 82198 Query 108165 AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 || || || || | || | ||||||||||| || ||||| || | | | | | Sbjct 82199 AAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAATGCGTACATCGCAGTCACA 82258 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284 || ||||| || || | |||| || ||||| | | | | | |||| |||| | Sbjct 82259 CGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACAACACTGCAGTTCTTTGAGTGGGCC 82318 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGA 108342 || |||||||| ||||| ||||| ||| ||||||||||||| | || ||| ||| Sbjct 82319 AAGGACACCTACAGCCCTGACGAGCACATCTGGGCCACCCTCAACCGCATGCCTGGTG-- 82376 Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 |||| ||||| | || | ||||| || |||| ||||||| ||| | || Sbjct 82377 TGCCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCCCC 82436 Query 108403 GGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCT 108462 | || |||||||||||||||| ||||| || ||||| ||| ||||| || | |||| Sbjct 82437 GCCTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAAGGGCGCGCCCTACCCGCCCT 82496 Query 108463 GCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 || | || || | | | || ||||||| ||||||| || ||| || |||||| | Sbjct 82497 GCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGC 82556 Query 108523 TCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGC 108582 ||||| | || ||||||||||| |||||||| ||||| |||||| || | | | | Sbjct 82557 TCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCGTGGTGGACGACGCTGCCATCC 82616 Query 108583 AGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 |||| | || |||||||| || || | |||| |||| || | | ||| |||| Sbjct 82617 TGTGCCTGGAGGAGTACCTGCGCCACAGGGCCCTCTACGGCAAGGGACTCTGAG 82670 >seq221 Length=1754029 Score = 104 bits (114), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||| || || ||||| || ||| || | ||||| || ||||| | Sbjct 1584820 TTGAGTGGGCAAAAGATACTTACAGCCCAGATGAATACTTATGGGCAACAATTCAGAGAA 1584879 Query 108334 CTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | || | |||| || |||||| || | || |||||| Sbjct 1584880 -TCCCTGAAGTCCCAGGTGCAGTGTCTTCTAGTGAC---AAGTATGACGTTTCTGACATG 1584935 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || || || || ||| || Sbjct 1584936 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAGGGTGCA 1584995 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| |||| ||| |||| | || | | |||| ||| |||| || ||| Sbjct 1584996 CCTTACCCACCATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 1585055 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 1585056 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 1585103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348179872935774