Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1225 129 5e-25 seq1104 113 4e-20 seq1769 91.5 1e-13 >seq1225 Length=250662 Score = 129 bits (142), Expect = 5e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||||||| || ||||| || ||||| ||||| |||||||| || || || || Sbjct 29860 ACCTCGTCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 29919 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || || ||||| || || ||||| ||||||||||||||| Sbjct 29920 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTG 29979 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||||||||| || Sbjct 29980 CCGGTCTCTGTCTGAGACTCGATGATAGC 30008 >seq1104 Length=759006 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 139337 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 139278 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| | ||||||||||||| | || ||||| | Sbjct 139277 TGACACCATTGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCCGATC 139219 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || ||||||||||| ||| ||||||| || || ||| || | Sbjct 139218 AGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 139159 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| ||||| ||||| || || | |||||||| || Sbjct 139158 ACATCCAGAAGGAATCTACTCTCCATCTTGTTCTGCGCCTGAGGGGTGG 139110 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || |||||||| ||||| ||||| || |||||| |||| || || || Sbjct 140479 AAGATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCC 140420 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | || | || || || ||| | ||||||||||||| | || ||||| Sbjct 140419 AGTGACACCATTGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCCGA 140361 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || || || ||||| ||| ||||||| || || ||| || Sbjct 140360 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 140301 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || || | |||||||| || Sbjct 140300 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 140250 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 139565 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 139506 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| | ||||||||||||| | || ||||| | Sbjct 139505 TGACACCATTGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCCGATC 139447 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || ||||| ||| ||||||| | || | ||||| | Sbjct 139446 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGATTACA 139387 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| ||||| || || || || | |||||||| || Sbjct 139386 ACATCCAGAAGGAATCTACTCTCCACCTTGTGCTGCGCCTGAGGGGTGG 139338 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 139793 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 139734 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| | || ||||||||||||| | || ||||| || Sbjct 139733 TGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 139674 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 139673 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 139614 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 139613 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 139566 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 140021 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 139962 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| | ||||||||||||| | || ||||| | Sbjct 139961 TGACACCATTGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCCGATC 139903 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || ||||| ||| ||||||| || || ||| || | Sbjct 139902 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 139843 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 139842 ACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 139794 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 140249 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 140190 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| | || ||||||||||||| | || ||||| || Sbjct 140189 TGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 140130 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 140129 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 140070 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 140069 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 140022 >seq1769 Length=296722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 36062 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCC 36003 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | |||| ||||| | || ||||||||||||| | || || || Sbjct 36002 AGTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 35943 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | | || || |||||||| ||| |||||||| || | ||| || Sbjct 35942 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCCGACTAC 35883 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| || |||| || | |||||||| || Sbjct 35882 AACATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTGAGGGGTGG 35833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445649659351920