Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq645 123 3e-23 seq1225 96.9 4e-15 seq20 89.7 6e-13 seq89 82.4 1e-10 >seq645 Length=3212271 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 2912551 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2912610 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 2912611 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2912670 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 2912671 CAACCACTCTCTCACC 2912686 >seq1225 Length=250662 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 23050 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 23109 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 23110 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 23169 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 23170 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 23220 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || || ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 25366 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 25425 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| ||||| || |||||||| || ||||| ||||| || | | | | Sbjct 25426 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 25485 Query 62507 ACTATTTCTAAGACCGTAT 62525 || ||||| | ||||||| Sbjct 25486 GCTGTTTCTGACACCGTAT 25504 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| || || ||||||| || || || |||| ||| || || || || ||||||| Sbjct 26854 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 26913 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| || ||||| || | || || | || || || ||||| ||||| || | Sbjct 26914 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAGGGGT 26973 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | | || || ||||| || | || || |||||||| || || || | ||| | Sbjct 26974 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 27033 Query 62806 TCTTATTAGAGATTTCAGC 62824 | || ||| |||||| Sbjct 27034 GTCTGTTGGAGCGTTCAGC 27052 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||| ||||||||||| || || | || || ||||| | || || Sbjct 31318 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 31377 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 31378 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 31436 Query 63386 TTCCAAGTATATGGC 63400 |||| ||| ||||| Sbjct 31437 CTCCAGGTAGATGGC 31451 >seq20 Length=3793915 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| | |||||| | ||||| || || | |||||||| || ||||||| Sbjct 786433 TTTCTATGATGTGTCTATCGTCTTGCAAGCCTTTATTCTTACTACTGCTGTATTTCTTGG 786374 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||||| ||| ||| | || ||||||||||| ||||| ||| ||| | |||| Sbjct 786373 ACTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 786320 >seq89 Length=3357968 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 2810900 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 2810841 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 2810840 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 2810806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629652658643280