Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq645 120 4e-22 seq20 116 5e-21 seq89 114 2e-20 seq1225 96.9 5e-15 >seq645 Length=3212271 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 2912551 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2912610 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 2912611 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2912670 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 2912671 CAACCACTCTCTCACC 2912686 >seq20 Length=3793915 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || | ||||||||||||||| ||| Sbjct 785021 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTACGAACAGATTGATGATGTCC 785080 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 785081 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 785140 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 | |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 785141 TAGGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 785200 Query 9408 TCCACTGTTTCACT 9421 || | ||||||||| Sbjct 785201 TCTATTGTTTCACT 785214 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 9457 AAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTA 9516 ||||| ||| | |||| | |||||||||| ||| ||||| ||||||||||| || | Sbjct 786297 AAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCA 786356 Query 9517 GAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGA 9576 |||||||||||||| ||||||| || |||||||| || || || ||||||| |||| Sbjct 786357 AGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGA 786416 Query 9577 CATGCACATCATAGAAA 9593 | ||||||||||||| Sbjct 786417 TAGACACATCATAGAAA 786433 >seq89 Length=3357968 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2809617 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2809558 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 2809557 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 2809498 Query 36300 C 36300 | Sbjct 2809497 C 2809497 >seq1225 Length=250662 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 23050 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 23109 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 23110 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 23169 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 23170 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 23220 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 25366 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 25425 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || |||||||| ||||| || |||||||| || ||||| ||||| || | | | | Sbjct 25426 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 25485 Query 65300 ACTATTTCTAAGACCGTAT 65318 || ||||| | ||||||| Sbjct 25486 GCTGTTTCTGACACCGTAT 25504 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| ||||| ||||||| || || || |||||||| || || || || ||||||| Sbjct 26854 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 26913 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||| || || || || | || || | || || || |||| ||||| || | Sbjct 26914 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAGGGGT 26973 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || |||||||| | || || |||||||| || || || | ||| | Sbjct 26974 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 27033 Query 65599 TCTTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 27034 GTCTGTTGGAGCGTTCAGC 27052 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||| ||||||||||| || || | || | ||||||| || || Sbjct 31318 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 31377 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 31378 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 31436 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 31437 CTCCAGGTAGATGGC 31451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||||| ||| || ||||||||||| | ||| || || || || || || || | || Sbjct 37323 CACTAAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGAA 37382 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 37383 TAGCGTAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGCGTATCCA 37442 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| ||||| || || ||| | || | || || || || ||||| Sbjct 37443 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 37488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658000432770840