Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq164 145 1e-29 seq638 122 1e-22 >seq164 Length=2216224 Score = 145 bits (160), Expect = 1e-29 Identities = 217/307 (71%), Gaps = 1/307 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || || || ||||| || ||| | |||| || ||| | | ||| Sbjct 1430542 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1430601 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| ||||||||||| | |||| Sbjct 1430602 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 1430661 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || || || || || | ||| | || Sbjct 1430662 AGCAGATAGCATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTG 1430721 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||| ||| || | | || | ||||| ||||| Sbjct 1430722 TTTCACCAAAGATGGCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCA 1430781 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || ||||| || ||||| | ||||| || || ||||| ||||||||||| Sbjct 1430782 TAGCATCAATGTCCCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1430841 Query 8978 TTATTAA 8984 ||||||| Sbjct 1430842 TTATTAA 1430848 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || |||| ||| || || ||||| || || ||| ||| || ||||| || ||||||| Sbjct 1432593 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 1432652 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 1432653 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 1432712 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 || | ||||| |||| || ||||||| | ||| | ||| || | | ||||| Sbjct 1432713 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 1432772 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 1432773 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 1432832 Query 9862 TG 9863 || Sbjct 1432833 TG 1432834 >seq638 Length=2525568 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| ||||| || |||||||||||||| | |||| Sbjct 1903984 TCTTAACTATCTCAAAGCCAGTTGCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGG 1903925 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 1903924 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 1903865 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | |||||| |||| ||||| | || || || || ||||||| Sbjct 1903864 TTTCTCCAAAAATACCATTGGGATGGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCA 1903805 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| ||||||||||| || || Sbjct 1903804 GAGCATCGATGTCTCCATACAG 1903783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708339246211440