Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq562 127 3e-25 >seq562 Length=113631 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 20463 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 20522 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || || |||| || |||| Sbjct 20523 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 20582 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 20583 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20642 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 20643 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 20702 Query 16672 CCG 16674 || Sbjct 20703 ACG 20705 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 26804 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 26745 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || || |||| || |||| Sbjct 26744 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 26685 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 26684 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 26625 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 26624 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 26565 Query 16672 CCG 16674 || Sbjct 26564 ACG 26562 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 44573 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 44632 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || || |||| || |||| Sbjct 44633 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 44692 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 44693 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 44752 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 44753 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 44812 Query 16672 CCG 16674 || Sbjct 44813 ACG 44815 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 53930 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 53871 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || || |||| || |||| Sbjct 53870 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 53811 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 53810 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 53751 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 53750 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 53691 Query 16672 CCG 16674 || Sbjct 53690 ACG 53688 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 79627 CGCCAAGCGGCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 79686 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 79687 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 79746 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 79747 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 79806 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 79807 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 79866 Query 16672 CCG 16674 || Sbjct 79867 ACG 79869 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 81352 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 81293 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || || |||| || |||| Sbjct 81292 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 81233 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 81232 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 81173 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 81172 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 81113 Query 16672 CCG 16674 || Sbjct 81112 ACG 81110 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 111085 CGCCAAGCGGCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 111143 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 111144 TCCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 111203 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| || || || ||| || | Sbjct 111204 CGCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 111263 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 111264 AGCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGG 111323 Query 16671 GCCG 16674 | || Sbjct 111324 GACG 111327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056044354043