Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq645 132 6e-26 seq89 111 2e-19 seq1225 96.9 4e-15 >seq645 Length=3212271 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 2912551 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2912610 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 2912611 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2912670 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 2912671 CAACCACTCTCTCACC 2912686 >seq89 Length=3357968 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 2809617 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2809558 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || ||||||||||| |||||||| ||||| ||||| | Sbjct 2809557 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 2809498 Query 33446 C 33446 | Sbjct 2809497 C 2809497 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 2810900 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 2810841 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || ||||||||||| ||||| ||||| Sbjct 2810840 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 2810806 >seq1225 Length=250662 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 23050 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 23109 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 23110 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 23169 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 23170 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 23220 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 25366 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 25425 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || |||||||| ||||| || |||||||| || ||||| ||||| || | | | | Sbjct 25426 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 25485 Query 62456 ACTATTTCTAAGACCGTAT 62474 || ||||| | ||||||| Sbjct 25486 GCTGTTTCTGACACCGTAT 25504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| ||||| ||||||||||| || || | || || ||||||| || || Sbjct 31318 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 31377 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 31378 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 31436 Query 63335 TTCCAAGTATATGGC 63349 |||| ||| ||||| Sbjct 31437 CTCCAGGTAGATGGC 31451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| ||||| ||||||| || || || |||||||| || || || || ||||||| Sbjct 26854 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 26913 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||| || || || || | || || | || || || |||| ||||| || | Sbjct 26914 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAGGGGT 26973 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | | || || ||||| || | || || |||||||| || || || | ||| | Sbjct 26974 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 27033 Query 62755 TCTTATTAGAGATTTCAGC 62773 | || ||| |||||| Sbjct 27034 GTCTGTTGGAGCGTTCAGC 27052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622784057915160