Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1104 123 2e-23 seq1769 105 6e-18 seq1225 86.0 5e-12 >seq1104 Length=759006 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | ||||| || || |||| || || || || || Sbjct 140479 AAGATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCC 140420 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | | || ||| || || |||||||| || ||||| |||||| Sbjct 140419 AGTGACACCATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 140360 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||| ||| | || ||| ||||||| | ||||| ||| Sbjct 140359 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 140300 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || ||||||||| | ||| | || |||| Sbjct 140299 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCG 140262 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| Sbjct 140020 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139961 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| || || |||||||| || ||||| |||||||| Sbjct 139960 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139901 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 139900 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139841 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||||||| | ||| | || |||| Sbjct 139840 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCG 139806 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| Sbjct 139792 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139733 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || || || |||||||| || ||||| |||||||| Sbjct 139732 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139673 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 139672 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139613 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||||||| | ||| | || |||| Sbjct 139612 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCG 139578 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| Sbjct 140248 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 140189 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || || || |||||||| || ||||| |||||||| Sbjct 140188 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 140129 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 140128 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 140069 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||||||| | ||| | || |||| Sbjct 140068 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCG 140034 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| Sbjct 139564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139505 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||| || || |||||||| || ||||| |||||||| Sbjct 139504 GACACCATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139445 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| || ||| |||| ||||||||| Sbjct 139444 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGATTACAAC 139385 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 139384 ATCCAGAAGGAATCTAC 139368 >seq1769 Length=296722 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 35603 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 35544 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| ||||| || ||||| Sbjct 35543 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 35484 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 35483 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCCGACTACAAC 35424 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || |||||| | ||| | || |||| || | || ||| Sbjct 35423 ATCCAAAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGGT 35376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 35831 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 35772 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| ||||| || ||||| Sbjct 35771 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 35712 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||| | || || |||||| | || || |||||| Sbjct 35711 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCTGACTACAAC 35652 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | ||| | || |||| Sbjct 35651 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCG 35617 >seq1225 Length=250662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| || ||||| | |||| ||| || ||| ||||| ||||| | || ||||| Sbjct 29878 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 29937 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 29938 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 29987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419620826521315