Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1225 93.3 4e-14 seq1104 87.8 2e-12 >seq1225 Length=250662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| |||||||||||||| ||||||||| | |||||| |||| | ||||||| Sbjct 29987 GAGACCGGCACGCCGTACATGCTGTACAAAGACTCTTGCAACCGGAAGAGCAATCAGCAG 29928 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 |||||||| || || ||||| || ||||| || | ||||| Sbjct 29927 AACTTGGGGACCATCAAATGCAGCAATCTGTGTACAGAAAT 29887 >seq1104 Length=759006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| ||||| || || |||||||| ||||| || || ||| | ||| ||| Sbjct 140264 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 140323 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | ||||| || || ||||||||||| || || Sbjct 140324 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 140383 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || ||| || | || | || | |||||| | |||||| ||||| || | | Sbjct 140384 CTGGATCTTTGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 140442 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| || || |||||||| || |||||| Sbjct 140443 TCTTGCCGGTCAGGGTCTTTACAAAGATCTGCATC 140477 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || || || || |||||||| ||||| || ||||| || ||| | ||| Sbjct 139352 CAGCACAAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATC 139411 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | ||||| || || ||||||||||| || || Sbjct 139412 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139471 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || ||| || | || | || | |||||| | |||||| ||||| || | | Sbjct 139472 CTGGATCTTTGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 139530 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || || || ||||| || ||||| Sbjct 139531 TCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 139564 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| ||||| || || |||||||| ||||| || || ||| | ||| ||| Sbjct 139580 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 139639 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | ||||| || || ||||||||||| || || Sbjct 139640 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139699 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || || ||| | || | || | |||||| | |||||| ||||| || | | Sbjct 139700 CTGGATCTTGGCTTTCA-CGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 139758 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || || || ||||| || ||||| Sbjct 139759 TCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 139792 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| ||||| || || |||||||| ||||| || || ||| | ||| ||| Sbjct 140036 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 140095 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | ||||| || || ||||||||||| || || Sbjct 140096 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 140155 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || || ||| | || | || | |||||| | |||||| ||||| || | | Sbjct 140156 CTGGATCTTGGCTTTCA-CGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 140214 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || || || ||||| || ||||| Sbjct 140215 TCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 140248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451884826011960